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28 Feb 2024
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Archaeology specific BERT models for English, German, and Dutch

Multilingual Named Entity Recognition in archaeology: an approach based on deep learning

Recommended by ORCID_LOGO based on reviews by Shawn Graham and 2 anonymous reviewers

Archaeology specific BERT models for English, German, and Dutch” (Brandsen 2024) explores the use of BERT-based models for Named Entity Recognition (NER) in archaeology across three languages: English, German, and Dutch. It introduces six models trained and fine-tuned on archaeological literature, followed by the presentation and evaluation of three models specifically tailored for NER tasks. The focus on multilingualism enhances the applicability of the research, while the meticulous evaluation using standard metrics demonstrates a rigorous methodology.

The introduction of NER for extracting concepts from literature is intriguing, while the provision of a method for others to contribute to BERT model pre-training enhances collaborative research efforts. The innovative use of BERT models to contextualize archaeological data is a notable strength, bridging the gap between digitized information and computational models.

Additionally, the paper's release of fine-tuned models and consideration of environmental implications add further value.

In summary, the paper contributes significantly to the task of NER in archaeology, filling a crucial gap and providing foundational tools for data mining and reevaluating legacy archaeological materials and archives.

Reference

Brandsen, A. (2024). Archaeology specific BERT models for English, German, and Dutch. Zenodo, 8296920, ver. 5 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.5281/zenodo.8296920

Archaeology specific BERT models for English, German, and DutchAlex Brandsen<p>This short paper describes a collection of BERT models for the archaeology domain. We took existing language specific BERT models in English, German, and Dutch, and further pre-trained them with archaeology specific training data. We then took ...Computational archaeologyMaria Pia di Buono2023-08-29 14:50:21 View
16 Apr 2024
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Creating an Additional Class Layer with Machine Learning to counter Overfitting in an Unbalanced Ancient Coin Dataset

A significant contribution to the problem of unbalanced data in machine learning research in archaeology

Recommended by ORCID_LOGO based on reviews by Simon Carrignon, Joel Santos and 1 anonymous reviewer

This paper [1] presents an innovative approach to address the prevalent challenge of unbalanced datasets in coin type recognition, shifting the focus from coin class type recognition to coin mint recognition. Despite this shift, the issue of unbalanced data persists. To mitigate this, the authors introduce a method to split larger classes into smaller ones, integrating them into an 'additional class layer'.

Three distinct machine learning (ML) methodologies were employed to identify new possible classes, with one approach utilising unsupervised clustering alongside manual intervention, while the others leverage object detection, and Natural Language Processing (NLP) techniques. However, despite these efforts, overfitting remained a persistent issue, prompting the authors to explore alternative methods such as dataset improvement and Generative Adversarial Networks (GANs).

The paper contributes significantly to the intersection of ML techniques and archaeology, particularly in addressing overfitting challenges. Furthermore, the authors' candid acknowledgment of the limitations of their approaches serves as a valuable resource for researchers encountering similar obstacles.

This study stems from the D4N4 project, aimed at developing a machine learning-based coin recognition model for the extensive "Corpus Nummorum" dataset, comprising over 19,600 coin types and 49,000 coins from various ancient landscapes. Despite encountering challenges with overfitting due to the dataset's imbalance, the authors' exploration of multiple methodologies and transparent documentation of their limitations enriches the academic discourse and provides a foundation for future research in this field.

Reference

[1] Gampe, S. and Tolle, K. (2024). Creating an Additional Class Layer with Machine Learning to counter Overfitting in an Unbalanced Ancient Coin Dataset. Zenodo, 8298077, ver. 4 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.5281/zenodo.8298077

Creating an Additional Class Layer with Machine Learning to counter Overfitting in an Unbalanced Ancient Coin DatasetSebastian Gampe, Karsten Tolle<p>We have implemented an approach based on Convolutional Neural Networks (CNN) for mint recognition for our Corpus Nummorum (CN) coin dataset as an alternative to coin type recognition, since we had too few instances for most of the types (classe...Computational archaeologyAlex Brandsen2023-08-29 16:26:41 View
02 Apr 2024
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The Ashwell Project: Creating an Online Geospatial Community

A nice project looking at under-represented demographic

Recommended by ORCID_LOGO based on reviews by Catriona Cooper and Steinar Kristensen

The paper by A. Lien-Talks [1] presents a small project looking at the use of crowd sourced data collection and particpatory GIS. In particular it looks at the potential of these tools in response to socially disruptive and isolating events such as the COVID-19 pandemic as well as the potential role of digitially mediated heritage initiatives in tackling some of the challenges of changing demographics and life styles.

The types of technologies employed are relatively mature, the project identifies potential for such approaches to be used within the local-history/local community settings, though is also a reminer that depsite the much broader adoption of technology within all areas of society than even a few years ago many barriers still remain. While the the sample size and data collected in the project is relatively modest, the focus on empathy toward the intended audiences from the design process, as well as some of the qualitative feedback reported serve as a reminder that participatory, or crowd-sourced data collection initiatives in heritage can, and perhaps should place potential social benefit before data-acquisition of objectives.

The project also presents a demographic that is not often represented within the literature and the publication and as such the publication of the article represents a meaningful contribution to ongoing discussions of the role heritage and digitally mediated community archaeology can play a role in developing our societies.

References

[1] Lien-Talks, A. (2024). The Ashwell Project: Creating an Online Geospatial Community. Zenodo, 8307882, ver. 4 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.5281/zenodo.8307882

The Ashwell Project: Creating an Online Geospatial CommunityAlphaeus Lien-Talks<p>Background:<br>As the world becomes increasingly digital, so too must the way in which archaeologists engage with the public. This was particularly important during the COVID-19 pandemic, and many outreach and engagement efforts began to move o...Computational archaeologyAlexis Pantos2023-09-01 11:25:54 View
31 Jan 2024
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Rivers vs. Roads? A route network model of transport infrastructure in Northern Italy during the Roman period

Modelling Roman Transport Infrastructure in Northern Italy

Recommended by based on reviews by Pau de Soto and Adam Pažout

Studies of the economy of the Roman Empire have become increasingly interdisciplinary and nuanced in recent years, allowing the discipline to make great strides in data collection and importantly in the methods through which this increasing volume of data can be effectively and meaningfully analysed [see for example 1 and 2]. One of the key aspects of modelling the ancient economy is understanding movement and transport costs, and how these facilitated trade, communication and economic development. With archaeologists adopting more computational techniques and utilising GIS analysis beyond simply creating maps for simple visualisation, understanding and modelling the costs of traversing archaeological landscapes has become a much more fruitful avenue of research. Classical archaeologists are often slower to adopt these new computational techniques than others in the discipline. This is despite (or perhaps due to) the huge wealth of data available and the long period of time over which the Roman economy developed, thrived and evolved. This all means that the Roman Empire is a particularly useful proving ground for testing and perfecting new methodological developments, as well as being a particularly informative period of study for understanding ancient human behaviour more broadly. This paper by Page [3] then, is well placed and part of a much needed and growing trend of Roman archaeologists adopting these computational approaches in their research. 

Page’s methodology builds upon De Soto’s earlier modelling of transport costs [4] and applies it in a new setting. This reflects an important practice which should be more widely adopted in archaeology. That of using existing, well documented methodologies in new contexts to offer wider comparisons. This allows existing methodologies to be perfected and tested more robustly without reinventing the wheel. Page does all this well, and not only builds upon De Soto’s work, but does so using a case study that is particularly interesting with convincing and significant results. 

As Page highlights, Northern Italy is often thought of as relatively isolated in terms of economic exchange and transport, largely due to the distance from the sea and the barriers posed by the Alps and Apennines. However, in analysing this region, and not taking such presumptions for granted, Page quite convincingly shows that the waterways of the region played an important role in bringing down the cost of transport and allowed the region to be far more interconnected with the wider Roman world than previous studies have assumed.  

This article is clearly a valuable and important contribution to our understanding of computational methods in archaeology as well as the economy and transport network of the Roman Empire. The article utilises innovative techniques to model transport in an area of the Roman Empire that is often overlooked, with the economic isolation of the area taken for granted. Having high quality research such as this specifically analysing the region using the most current methodologies is of great importance. Furthermore, developing and improving methodologies like this allow for different regions and case studies to be analysed and directly compared, in a way that more traditional analyses simply cannot do. As such, Page has demonstrated the importance of reanalysing traditional assumptions using the new data and analyses now available to archaeologists. 

References

[1] Brughmans, T. and Wilson, A. (eds.) (2022). Simulating Roman Economies: Theories, Methods, and Computational Models. Oxford. 

[2] Dodd, E.K. and Van Limbergen, D. (eds.) (2024). Methods in Ancient Wine Archaeology: Scientific Approaches in Roman Contexts. London ; New York. 

[3] Page, J. (2024). Rivers vs. Roads? A route network model of transport infrastructure in Northern Italy during the Roman period, Zenodo, 7971399, ver. 3 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.5281/zenodo.7971399

[4] De Soto P (2019). Network Analysis to Model and Analyse Roman Transport and Mobility. In: Finding the Limits of the Limes. Modelling Demography, Economy and Transport on the Edge of the Roman Empire. Ed. by Verhagen P, Joyce J, and Groenhuijzen M. Springer Open Access, pp. 271–90. https://doi.org/10.1007/978-3-030-04576-0_13

Rivers vs. Roads? A route network model of transport infrastructure in Northern Italy during the Roman periodJames Page<p>Northern Italy has often been characterised as an isolated and marginal area during the Roman period, a region constricted by mountain ranges and its distance from major shipping lanes. Historians have frequently cited these obstacles, alongsid...Classic, Computational archaeologyAndrew McLean2023-05-28 15:11:31 View
26 Mar 2024
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What is a form? On the classification of archaeological pottery.

Abstract and Concrete – Querying the Metaphysics and Geometry of Pottery Classification

Recommended by ORCID_LOGO, and ORCID_LOGO based on reviews by 2 anonymous reviewers

“What is a form? On the classification of archaeological pottery” by P. Boissinot (1) is a timely contribution to broader theoretical reflections on classification and ordering practices in archaeology, including type-construction and justification. Boissinot rightly reminds us that engagement with the type concept always touches upon the uneasy relationship between the abstract and the concrete, alternatively cast as the ongoing struggle in knowledge production between idealization and particularization. Types are always abstract and as such both ‘more’ and ‘less’ than the concrete objects they refer to. They are ‘more’ because they establish a higher-order identity of variously heterogeneous, concrete objects and they are ‘less’ because they necessarily reduce the richness of the concrete and often erase it altogether. The confusion that types evoke in archaeology and elsewhere has therefore a lot to do with the fact that types are simply not spatiotemporally distinct particulars. As abstract entities, types so almost automatically re-introduce the question of universalism but they do not decide this question, and Boissinot also tentatively rejects such ambitions. In fact, with Boissinot (1) it may be said that universality is often precisely confused with idealization, which is indispensable to all archaeological ordering practices. 

Idealization, increasingly recognized as an important epistemic operation in science (2, 3), paradoxically revolves around the deliberate misrepresentation of the empirical systems being studied, with models being the paradigm cases (4). Models can go so far as to assume something strictly false about the phenomena under consideration in order to advance their epistemic goals. In the words of Angela Potochnik (5), ‘the role of idealization in securing understanding distances understanding from truth but […] this understanding nonetheless gives rise to scientific knowledge’. The affinity especially to models may in part explain why types are so controversial and are often outright rejected as ‘real’ or ‘useful’ by those who only recognize the existence of concrete particulars (nominalism). As confederates of the abstract, types thus join the ranks of mathematics and geometry, which the author identifies as prototypical abstract systems. Definitions are also abstract. According to Boissinot (1), they delineate a ‘position of limits’, and the precision and rigorousness they bring comes at the cost of subjectivity. This unites definitions and types, as both can be precise and clear-cut but they can never be strictly singular or without alternative – in order to do so, they must rely on yet another higher-order system of external standards, and so ad infinitum. 

Boissinot (1) advocates a mathematical and thus by definition abstract approach to archaeological type-thinking in the realm of pottery, as the abstractness of this approach affords relatively rigorous description based on the rules of geometry. Importantly, this choice is not a mysterious a priori rooted in questionable ideas about the supposed superiority of such an approach but rather is the consequence of a careful theoretical exploration of the particularities (domain-specificities) of pottery as a category of human practice and materiality. The abstract thus meets the concrete again: objects of pottery, in sharp contrast to stone artefacts for example, are the product of additive processes. These processes, moreover, depend on the ‘fusion’ of plastic materials and the subsequent fixation of the resulting configuration through firing (processes which, strictly speaking, remove material, such as stretching, appear to be secondary vis-à-vis global shape properties). Because of this overriding ‘fusion’ of pottery, the identification of parts, functional or otherwise, is always problematic and indeterminate to some extent. As products of fusion, parts and wholes represent an integrated unity, and this distinguishes pottery from other technologies, especially machines. The consequence is that the presence or absence of parts and their measurements may not be a privileged locus of type-construction as they are in some biological contexts for example. The identity of pottery objects is then generally bound to their fusion. As a ‘plastic montage’ rather than an assembly of parts, individual parts cannot simply be replaced without threatening the identity of the whole. Although pottery can and must sometimes be repaired, this renders its objects broadly morpho-static (‘restricted plasticity’) rather than morpho-dynamic, which is a condition proper to other material objects such as lithic (use and reworking) and metal artefacts (deformation) but plays out in different ways there. This has a number of important implications, namely that general shape and form properties may be expected to hold much more relevant information than in technological contexts characterized by basal modularity or morpho-dynamics.

It is no coincidence that ‘fusion’ is also emphasized by Stephen C. Pepper (6) as a key category of what he calls contextualism. Fusion for Pepper pays dividends to the interpenetration of different parts and relations, and points to a quality of wholes which cannot be reduced any further and integrates the details into a ‘more’. Pepper maintains that ‘fusion, in other words, is an agency of simplification and organization’ – it is the ‘ultimate cosmic determinator of a unit’ (p. 243-244, emphasis added). This provides metaphysical reasons to look at pottery from a whole-centric perspective and to foreground the agency of its materiality. This is precisely what Boissinot (1) does when he, inspired by the great techno-anthropologist François Sigaut (7), gestures towards the fact that elementarily a pot is ‘useful for containing’. He thereby draws attention not to the function of pottery objects but to what pottery as material objects do by means of their material agency: they disclose a purposive tension between content and container, the carrier and carried as well as inclusion and exclusion, which can also be understood as material ‘forces’ exerted upon whatever is to be contained. This, and not an emic reading of past pottery use, leads to basic qualitative distinctions between open and closed vessels following Anna O. Shepard’s (8) three basic pottery categories: unrestricted, restricted, and necked openings. These distinctions are not merely intuitive but attest to the object-specificity of pottery as fused matter. 

This fused dimension of pottery also leads to a recognition that shapes have geometric properties that emerge from the forced fusion of the plastic material worked, and Boissinot (1) suggests that curvature is the most prominent of such features, which can therefore be used to describe ‘pure’ pottery forms and compare abstract within-pottery differences. A careful mathematical theorization of curvature in the context of pottery technology, following George D. Birkhoff (9), in this way allows to formally distinguish four types of ‘geometric curves’ whose configuration may serve as a basis for archaeological object grouping. The idealization involved in this proposal is not accidental but deliberately instrumental – it reminds us that type-thinking in archaeology cannot escape the abstract. It is notable here that the author does not suggest to simply subject total pottery form to some sort of geometric-morphometric analysis but develops a proposal that foregrounds a limited range of whole-based geometric properties (in contrast to part-based) anchored in general considerations as to the material specificity of pottery as quasi-species of objects.

As Boissinot (1) notes himself, this amounts to a ‘naturalization’ of archaeological artefacts and offers somewhat of an alternative (a third way) to the old discussion between disinterested form analysis and functional (and thus often theory-dependent) artefact groupings. He thereby effectively rejects both of these classic positions because the first ignores the particularities of pottery and the real function of artefacts is in most cases archaeologically inaccessible. In this way, some clear distance is established to both ethnoarchaeology and thing studies as a project. Attending to the ‘discipline of things’ proposal by Bjørnar Olsen and others (10, 11), and by drawing on his earlier work (12), Boissinot interestingly notes that archaeology – never dealing with ‘complete societies’ – could only be ‘deficient’. This has mainly to do with the underdetermination of object function by the archaeological record (and the confusion between function and functionality) as outlined by the author. It seems crucial in this context that Boissinot does not simply query ‘What is a thing?’ as other thing-theorists have previously done, but emphatically turns this question into ‘In what way is it not the same as something else?’. He here of course comes close to Olsen’s In Defense of Things insofar as the ‘mode of being’ or the ‘ontology’ of things is centred. What appears different, however, is the emphasis on plurality and within-thing heterogeneity on the level of abstract wholes. With Boissinot, we always have to speak of ontologies and modes of being and those are linked to different kinds of things and their material specificities. Theorizing and idealizing these specificities are considered central tasks and goals of archaeological classification and typology. As such, this position provides an interesting alternative to computational big-data (the-more-the-better) approaches to form and functionally grounded type-thinking, yet it clearly takes side in the debate between empirical and theoretical type-construction as essential object-specific properties in the sense of Boissinot (1) cannot be deduced in a purely data-driven fashion.

Boissinot’s proposal to re-think archaeological types from the perspective of different species of archaeological objects and their abstract material specificities is thought-provoking and we cannot stop wondering what fruits such interrogations would bear in relation to other kinds of objects such as lithics, metal artefacts, glass, and so forth. In addition, such meta-groupings are inherently problematic themselves, and they thus re-introduce old challenges as to how to separate the relevant super-wholes, technological genesis being an often-invoked candidate discriminator. The latter may suggest that we cannot but ultimately circle back on the human context of archaeological objects, even if we, for both theoretical and epistemological reasons, wish to embark on strictly object-oriented archaeologies in order to emancipate ourselves from the ‘contamination’ of language and in-built assumptions.

 

Bibliography

1. Boissinot, P. (2024). What is a form? On the classification of archaeological pottery, Zenodo, 7429330, ver. 4 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.5281/zenodo.10718433

2. Fletcher, S.C., Palacios, P., Ruetsche, L., Shech, E. (2019). Infinite idealizations in science: an introduction. Synthese 196, 1657–1669. https://doi.org/10.1007/s11229-018-02069-6

3. Potochnik, A. (2017). Idealization and the aims of science (University of Chicago Press). https://doi.org/10.7208/chicago/9780226507194.001.0001

4. J. Winkelmann, J. (2023). On Idealizations and Models in Science Education. Sci & Educ 32, 277–295. https://doi.org/10.1007/s11191-021-00291-2

5. Potochnik, A. (2020). Idealization and Many Aims. Philosophy of Science 87, 933–943. https://doi.org/10.1086/710622

6. Pepper S. C. (1972). World hypotheses: a study in evidence, 7. print (University of California Press).

7. Sigaut, F. (1991). “Un couteau ne sert pas à couper, mais en coupant. Structure, fonctionnement et fonction dans l’analyse des objets” in 25 Ans d’études Technologiques En Préhistoire. Bilan et Perspectives (Association pour la promotion et la diffusion des connaissances archéologiques), pp. 21–34.

8. Shepard, A. O. (1956). Ceramics for the Archeologist (Carnegie Institution of Washington n° 609).

9. Birkhoff G. D. (1933). Aesthetic Measure (Harvard University Press).

10. Olsen, B. (2010). In defense of things: archaeology and the ontology of objects (AltaMira Press). https://doi.org/10.1093/jdh/ept014

11. Olsen, B., Shanks, M., Webmoor, T., Witmore, C. (2012). Archaeology: the discipline of things (University of California Press). https://doi.org/10.1525/9780520954007

12. Boissinot, P. (2011). “Comment sommes-nous déficients ?” in L’archéologie Comme Discipline ? (Le Seuil), pp. 265–308.

What is a form? On the classification of archaeological pottery.Philippe Boissinot<p>The main question we want to ask here concerns the application of philosophical considerations on identity about artifacts of a particular kind (pottery). The purpose is the recognition of types and their classification, which are two of the ma...Ceramics, Theoretical archaeologyShumon Tobias Hussain2022-12-13 15:04:45 View
02 May 2023
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Transmission of lithic and ceramic technical know-how in the Early Neolithic of central-western Europe: Shedding Light on the Social Mechanisms underlying Cultural Transition

A Thought Provoking Consideration of Craft in the Neolithic

Recommended by based on reviews by Bogdana Milić and 1 anonymous reviewer

The pioneering work of Leroi-Gourhan introduced archaeologists to the concept of the chaîne opératoire[1], whereby, like his supervisor Mauss[2], Leroi-Gourhan proposed direct links between bodily actions and aspects of cultural identity. The chaîne opératoire offers a powerful conceptual tool with which to reconstruct and describe the technological practices undertaken by craftspeople, linking material objects to the cultural context in which crafts are learnt. Although initially applied to lithics, the concept today is well known in ceramic studies, as well as, other material crafts, in order to identify aspects of tradition and identity through ideas linked to technological style[3,4] and communities of practice[5].

Utilizing this approach, Denis et al.[6] use the chaîne opératoire to look at both lithics and ceramics together from a diachronic viewpoint, to examine technical systems present over the transition between Linearbandkeramic (LBK) and post LBK Blicquy/Villeneuve-Saint German (BQY/VSG) timeframes. This much needed comparative and diachronic perspective, focuses on material from the sites of Vaux-et-Borset and Verlaine in Belgium, and has enabled the authors to consider the impact of changing social dynamics on these two crafts simultaneously.

The authors examine the ceramic and lithic assemblages from a macroscopic and morphological perspective in order to identify techniques of production. The data gathered testifies to the dominance of one production technique for each craft within the LBK. There is particularly striking homogeneity noted for the lithics that suggests the transmission of a single tradition over the Hesbaye area, whilst the ceramics display greater regional diversity. The picture alters somewhat for the BQY/VSG material where it seems there is an increase in the diversity of production techniques, with both the introduction of new techniques, as well as a degree of hybridization of earlier techniques to form new BQY/VSG chaînes opératoires that have LBK roots. The BQY/VSG diversity noted for the lithics is especially interesting, with the introduction of techniques that attest to increased expertise which the authors attest to the migration of an external group.

The results of this work have allowed Denis et al. to discuss multiple influences on the technical systems they identify. Rather than trying to fit the data within a single model, the authors demonstrate the need for nuance, considering the social changes associated with Neolithic migration and interactions, as multifaced and dynamic. As such, they are able to show not only the influence of contact with other groups, but that the apparent migration of external groups does not simply lead to the replacement of the crafting heritage already established at the sites they have examined.

In concluding the authors acknowledge, that as scholars push the existing state of knowledge (in this respect analysis of raw materials would make an especially important contribution), the picture presented in the paper may alter. Future work will hopefully fill in current gaps, particularly in terms of how far the trends identified extend, and the extent to which the lithic and ceramic pictures diversify on a broader geographical scale. It is certain that based on such results, future work should adopt the comparative approach presented by the authors, who have demonstrated its explanatory potential for understanding the technical and cultural groups we all study.

 
[1] Leroi-Gourhan, A. 1971. Evolution et techniques I- L'Homme et la matière, 2nd Edition. Albin Michel: Paris, Leroi-Gourhan, A. 1973. Evolution et techniques II- Milieu et techniques 2nd Edition. Paris: Albin Michel.

[2] Mauss, M. 2009 [1934]. Techniques, Technology and Civilisation. Edited and introduced by N. Schlanger. New York/Oxford: Durkheim Press/Berghahn Books.

[3] Lechtman, H. 1977. Style in Technology: some early thoughts. In H. Lechtman and R.S. Merrill (eds.) Material Culture: styles, organization and dynamics of technology. Proceedings of the American Ethnological Society 1975, St. Paul, 3-20.

[4] Gosselain, O. 1992. Technology and Style: Potters and Pottery Among Bafia of Cameroon. Man 27(3) 559- 586. htpps://doi.org/10.2307/2803929.

[5] Wenger, E. 1998. Communities of practice: Learning, meaning, and identity. Cambridge: Cambridge University Press.

[6] Denis, S., Gomart, L., Burnez-Lanotte, L. and Allard, P. (2023). Transmission of lithic and ceramic technical know-how in the Early Neolithic of central-western Europe: Shedding Light on the Social Mechanisms underlying Cultural Transition. OSF Preprints, gqnht, ver. 5 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.31219/osf.io/gqnht


 
 

Transmission of lithic and ceramic technical know-how in the Early Neolithic of central-western Europe: Shedding Light on the Social Mechanisms underlying Cultural Transition Solène Denis, Louise Gomart, Laurence Burnez-Lanotte, Pierre Allard<p>Research on the European Neolithisation agrees that a process of colonisation throughout the sixth millennium BC underlies the spread of agricultural ways of life on the continent. From central to central-western Europe, this colonisation path ...Ceramics, Europe, Lithic technology, NeolithicClare Burke2022-11-18 12:03:55 View
02 May 2024
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Machine Learning for UAV and Ground-Captured Imagery: Toward Standard Practices

A step forward in detecting small objects in UAV data for archaeological surveying

Recommended by ORCID_LOGO based on reviews by 2 anonymous reviewers

In this paper [1], the authors describe how they apply machine learning with YOLOv5 to classify visual data, aiming to enhance understanding of archaeological phenomena before conducting destructive fieldwork. Despite challenges, the integration of machine learning with remote sensing technology was seen as transformative, enabling precise recording of areas of interest and assessment of environmental risk factors. The paper discusses successes, failures, and future directions in machine learning research, emphasising the need for standardisation and integration of streamlined methods. The application of machine learning techniques facilitates non-destructive analysis of material culture records, improving conservation efforts and offering insights into both past and contemporary phenomena. While the initial use of YOLOv5 showed potential for consistent detection of archaeological features, further refinement and dataset enlargement are deemed necessary for broader application in non-destructive archaeological surveying. The authors advocate for the integration of machine learning tools in archaeological research to save time, resources, and promote ethical digital recording practices. They highlight the importance of standardised methodologies to enhance credibility and reproducibility, aiming to contribute to the ongoing dialogue in computational archaeology.

Overall, I think this paper is a good step forward in detecting small objects in UAV data, and contains useful information for similar studies. The aim towards greater reproducibility and standardisation is of course shared more widely in the machine learning community, and this study is a good example of how to approach this.

References

[1] Sharp, K., Christofis, B., Eslamiat, H., Nepal, U. and Osores Mendives, C. (2024). Machine Learning for UAV and Ground-Captured Imagery: Toward Standard Practices. Zenodo, 8307612, ver. 5 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.5281/zenodo.8307612

Machine Learning for UAV and Ground-Captured Imagery: Toward Standard PracticesSharp Kayeleigh, Christofis Brooklyn, Eslamiat Hossein, Nepal Upesh, Osores Mendives Carlos<p>Our collaborative work began in 2019 with the intent to overcome obstacles that had arisen from the inability to access curated artifact collections from remote locations. It was our specific aim to not only create digital twins of excavated ob...Ceramics, Computational archaeology, Remote sensing, South AmericaAlex Brandsen2023-09-01 09:56:18 View
02 Feb 2024
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Implementing Digital Documentation Techniques for Archaeological Artifacts to Develop a Virtual Exhibition: the Necropolis of Baley Collection

Out of the storeroom and into the virtual

Recommended by ORCID_LOGO based on reviews by Alicia Walsh and 1 anonymous reviewer

This paper (Raykovska et al. 2023) discusses the digital documentation techniques and development of a virtual exhibition for artefacts retrieved from the necropolis of Baley, Bulgaria. The principal aim of this particular project is a solid one, trying to provide a solution to display artefacts that would otherwise remain hidden in museum storerooms. The paper describes how through a combination of 3D scanning and photogrammetry high quality 3D models have been produced, and provide content for an online virtual exhibition for the scientific community but also the larger public. It is a well-written and concise paper, in which the information on developed methods and techniques are transparently described, and various important aspects of digitization workflows, such as the importance of storing raw data, are addressed.

The paper is a timely discussion on this subject, as strategies to develop digital artefact collections and what to do with those are increasingly being researched. Specifically, it discusses a workflow and its results, both in great detail. Although critical reflection on the process, goals and results from various perspectives would have been a valuable addition to the paper (cf., Jeffra 2020, Paardekoper 2019), it nonetheless provides a good practice example of how to approach the creation of a virtual museum. Those who consider projects concerning digital documentation of archaeological artefacts as well as the creation of virtual spaces to use those in for research, education or valorisation purposes would do well to read this paper carefully.

References

Jeffra, C., Hilditch, J., Waagen, J., Lanjouw, T., Stoffer, M., de Gelder, L., and Kim, M. J. (2020). Blending the Material and the Digital: A Project at the Intersection of Museum Interpretation, Academic Research, and Experimental Archaeology. The EXARC Journal, 2020(4). https://exarc.net/ark:/88735/10541 

Paardekooper, R.P. (2019). Everybody else is doing it, so why can’t we? Low-tech and High-tech approaches in archaeological Open-Air Museums. The EXARC Journal, 2019(4). https://exarc.net/ark:/88735/10457/ 

Raykovska, M., Jones, K., Klecherova, H., Alexandrov, S., Petkov, N., Hristova, T., and Ivanov, G. (2023). Implementing Digital Documentation Techniques for Archaeological Artifacts to Develop a Virtual Exhibition: the Necropolis of Baley Collection. https://doi.org/10.5281/zenodo.10091870

Implementing Digital Documentation Techniques for Archaeological Artifacts to Develop a Virtual Exhibition: the Necropolis of Baley CollectionRaykovska Miglena, Jones Kristen, Klecherova Hristina, Alexandrov Stefan, Petkov Nikolay, Hristova Tanya, Ivanov Georgi<p>Over the past decade, virtual reality has been quickly growing in popularity across disciplines including the field of archaeology and cultural heritage. Despite numerous artifacts being uncovered each year by archaeological excavations around ...Ceramics, Computational archaeology, Conservation/Museum studiesJitte Waagen2023-06-12 14:02:44 View
13 Jan 2024
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Dealing with post-excavation data: the Omeka S TiMMA web-database

Managing Archaeological Data with Omeka S

Recommended by ORCID_LOGO based on reviews by Electra Tsaknaki and 1 anonymous reviewer

Managing data in archaeology is a perennial problem. As the adage goes, every day in the field equates to several days in the lab (and beyond). For better or worse, past archaeologists did all their organizing and synthesis manually, by hand, but since the 1970s ways of digitizing data for long term management and analysis have gained increasing attention [1]. It is debatable whether this ever actually made things easier, particularly given the associated problem of sustainable maintenance and accessibility of the data. Many older archaeologists, for instance, still have reels and tapes full of data that now require a new form of archaeology to excavate (see [2] for an unrealized idea on how to solve this).

Today, the options for managing digital archaeological data are limited only by one’s imagination. There are systems built specifically for archaeology, such as Arches [3], Ark [4], Codifi [5], Heurist [6], InTerris Registries [7], OpenAtlas [8], S-Archeo [9], and Wild Note [10], as well as those geared towards museum collections like PastPerfect [11] and CatalogIt [12], among others. There are also mainstream databases that can be adapted to archaeological needs like MS Access [13] and Claris FileMaker [14], as well as various web database apps that function in much the same way (e.g., Caspio [15], dbBee [16], Amazon's Simpledb [17], Sci-Note [18], etc.) — all with their own limitations in size, price, and utility. One could also write the code for specific database needs using pre-built frameworks like those in Ruby-On-Rails [19] or similar languages. And of course, recent advances in machine-learning and AI will undoubtedly bring new solutions in the near future.

But let’s be honest — most archaeologists probably just use Excel. That's partly because, given all the options, it is hard to decide the best tool and whether its worth changing from your current system, especially given few real-world examples in the literature. Bastien Rueff’s new paper [20] is therefore a welcomed presentation on the use of Omeka S [21] to manage data collected for the Timbers in Minoan and Mycenaean Architecture (TiMMA) project. Omeka S is an open-source web-database that is based in PHP and MySQL, and although it was built with the goal of connecting digital cultural heritage collections with other resources online, it has been rarely used in archaeology. Part of the issue is that Omeka Classic was built for use on individual sites, but this has now been scaled-up in Omeka S to accommodate a plurality of sites. 

Some of the strengths of Omeka S include its open-source availability (accessible regardless of budget), the way it links data stored elsewhere on the web (keeping the database itself lean), its ability to import data from common file types, and its multi-lingual support. The latter feature was particularly important to the TiMAA project because it allowed members of the team (ranging from English, Greek, French, and Italian, among others) to enter data into the system in whatever language they felt most comfortable.

However, there are several limitations specific to Omeka S that will limit widespread adoption. Among these, Omeka S apparently lacks the ability to export metadata, auto-fill forms, produce summations or reports, or provide basic statistical analysis. Its internal search capabilities also appear extremely limited. And that is not to mention the barriers typical of any new software, such as onerous technical training, questionable long-term sustainability, or the need for the initial digitization and formatting of data. But given the rather restricted use-case for Omeka S, it appears that this is not a comprehensive tool but one merely for data entry and storage that requires complementary software to carry out common tasks.

As such, Rueff has provided a review of a program that most archaeologists will likely not want or need. But if one was considering adopting Omeka S for a project, then this paper offers critical information for how to go about that. It is a thorough overview of the software package and offers an excellent example of its use in archaeological practice.


NOTES

[1] Doran, J. E., and F. R. Hodson (1975) Mathematics and Computers in Archaeology. Harvard University Press.

[2] Snow, Dean R., Mark Gahegan, C. Lee Giles, Kenneth G. Hirth, George R. Milner, Prasenjit Mitra, and James Z. Wang (2006) Cybertools and Archaeology. Science 311(5763):958–959.

[3] https://www.archesproject.org/

[4] https://ark.lparchaeology.com/

[5] https://codifi.com/

[6] https://heuristnetwork.org/

[7] https://www.interrisreg.org/

[8] https://openatlas.eu/

[9] https://www.skinsoft-lab.com/software/archaelogy-collection-management

[10] https://wildnoteapp.com/

[11] https://museumsoftware.com/

[12] https://www.catalogit.app/

[13] https://www.microsoft.com/en-us/microsoft-365/access

[14] https://www.claris.com/filemaker/

[15] https://www.caspio.com/

[16] https://www.dbbee.com/

[17] https://aws.amazon.com/simpledb/

[18] https://www.scinote.net/

[19] https://rubyonrails.org/

[20] Rueff, Bastien (2023) Dealing with Post-Excavation Data: The Omeka S TiMMA Web-Database. peer-reviewed and recommended by Peer Community in Archaeology. https://zenodo.org/records/7989905

[21] https://omeka.org/

 

Dealing with post-excavation data: the Omeka S TiMMA web-databaseBastien Rueff<p>This paper reports on the creation and use of a web database designed as part of the TiMMA project with the Content Management System Omeka S. Rather than resulting in a technical manual, its goal is to analyze the relevance of using Omeka S in...Buildings archaeology, Computational archaeologyJonathan Hanna2023-05-31 12:16:25 View
03 Nov 2023
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Multiproxy analysis exploring patterns of diet and disease in dental calculus and skeletal remains from a 19th century Dutch population

Detection of plant-derived compounds in XIXth c. Dutch dental calculus

Recommended by ORCID_LOGO based on reviews by Mario Zimmerman and 2 anonymous reviewers

The advent of biomolecular methods has certainly increased our overall comprehension of archaeological societies. One of the materials of choice to perform ancient DNA or proteomics analyses is dental calculus[1,2], a mineralised biofilm formed during the life of one individual. Research conducted in the past few decades has demonstrated the potential of dental calculus to retrieve information about past societies health[3–6], diet[7–11], and more recently, as a putative proxy for isotopic analyses[12]. 


Based on a proof-of-concept previously published by their team[13], Bartholdy and collaborators’ paper presents the identification of compounds and their secondary metabolites derived from consumed plants in individuals from a XIXth century rural Dutch archaeological deposit[14]. Sørensen indeed demonstrated that drug intake is recorded in dental calculus, which are mineralised biofilms that can encapsulate drug compounds long after the latter are no longer detectable in blood. The liquid-chromatography coupled to mass spectrometry (LC-MS/MS)-based method developed showed the potential for archaeological applications[13]. 

Bartholdy et al. utilised the developed LC-MS/MS method to 41 buried individuals, most of them bearing pipe notches on their teeth, from the cemetery of the 19th rural settlement of Middenbeemster, the Netherlands. Along with dental calculus sampling and analysis, they undertook the skeletal and dental examination of all of the specimens in order to assess sex, age-at-death, and pathology on the two tissues. The results obtained on the dental calculus of the sampled individuals show probable consumption of tea, coffee and tobacco indicated by the detection of the various plant compounds and associated metabolites (caffeine, nicotine and salicylic acid, amongst others). 

The authors were able to place their results in perspective and propose several interpretations concerning the ingestion of plant-derived products, their survival in dental calculus and the importance of their findings for our overall comprehension of health and habits of the XIXth c. Dutch population. The paper is well-written and accessible to a non-specialist audience, maximising the impact of their study. I personally really enjoyed handling this manuscript that is not only a good piece of scientific literature but also a pleasant read, the reason why I warmly recommend this paper to be accessible through PCI Archaeology.

References

1.      Fagernäs, Z. and Warinner, C. (2023) Dental Calculus. in Handbook of Archaeological Sciences 575–590. https://doi.org/10.1002/9781119592112.ch28

2.      Wright, S. L., Dobney, K. & Weyrich, L. S. (2021) Advancing and refining archaeological dental calculus research using multiomic frameworks. STAR: Science & Technology of Archaeological Research 7, 13–30. https://doi.org/10.1080/20548923.2021.1882122

3.      Fotakis, A. K. et al. (2020) Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus. Philos. Trans. R. Soc. Lond. B Biol. Sci. 375, 20190584. https://doi.org/10.1098/rstb.2019.0584

4.      Warinner, C. et al. (2014) Pathogens and host immunity in the ancient human oral cavity. Nat. Genet. 46, 336–344. https://doi.org/10.1038/ng.2906

5.      Weyrich, L. S. et al. (2017) Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus. Nature 544, 357–361. https://doi.org/10.1038/nature21674

6.      Jersie-Christensen, R. R. et al. (2018) Quantitative metaproteomics of medieval dental calculus reveals individual oral health status. Nat. Commun. 9, 4744. https://doi.org/10.1038/s41467-018-07148-3

7.      Hendy, J. et al. (2018) Proteomic evidence of dietary sources in ancient dental calculus. Proc. Biol. Sci. 285. https://doi.org/10.1098/rspb.2018.0977

8.      Wilkin, S. et al. (2020) Dairy pastoralism sustained eastern Eurasian steppe populations for 5,000 years. Nat Ecol Evol 4, 346–355. https://doi.org/10.1038/s41559-020-1120-y

9.      Bleasdale, M. et al. (2021) Ancient proteins provide evidence of dairy consumption in eastern Africa. Nat. Commun. 12, 632. https://doi.org/10.1038/s41467-020-20682-3

10.   Warinner, C. et al. (2014) Direct evidence of milk consumption from ancient human dental calculus. Sci. Rep. 4, 7104. https://doi.org/10.1038/srep07104

11.   Buckley, S., Usai, D., Jakob, T., Radini, A. and Hardy, K. (2014) Dental Calculus Reveals Unique Insights into Food Items, Cooking and Plant Processing in Prehistoric Central Sudan. PLoS One 9, e100808. https://doi.org/10.1371/journal.pone.0100808

12.   Salazar-García, D. C., Warinner, C., Eerkens, J. W. and Henry, A. G. (2023) The Potential of Dental Calculus as a Novel Source of Biological Isotopic Data. in Exploring Human Behavior Through Isotope Analysis: Applications in Archaeological Research (eds. Beasley, M. M. & Somerville, A. D.) 125–152. https://doi.org/10.1007/978-3-031-32268-6_6

13.   Sørensen, L. K., Hasselstrøm, J. B., Larsen, L. S. and Bindslev, D. A. (2021) Entrapment of drugs in dental calculus - Detection validation based on test results from post-mortem investigations. Forensic Sci. Int. 319, 110647. https://doi.org/10.1016/j.forsciint.2020.110647

14.   Bartholdy, Bjørn Peare, Hasselstrøm, Jørgen B., Sørensen, Lambert K., Casna, Maia, Hoogland, Menno, Historisch Genootschap Beemster and Henry, Amanda G. (2023) Multiproxy analysis exploring patterns of diet and disease in dental calculus and skeletal remains from a 19th century Dutch population, Zenodo, 7649150, ver. 5 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.5281/zenodo.7649150

Multiproxy analysis exploring patterns of diet and disease in dental calculus and skeletal remains from a 19th century Dutch populationBartholdy, Bjørn Peare; Hasselstrøm, Jørgen B.; Sørensen, Lambert K.; Casna, Maia; Hoogland, Menno; Historisch Genootschap Beemster; Henry, Amanda G.<p>Dental calculus is an excellent source of information on the dietary patterns of past populations, including consumption of plant-based items. The detection of plant-derived residues such as alkaloids and their metabolites in dental calculus pr...Bioarchaeology, Post-medievalLouise Le Meillour Mario Zimmerman, Anonymous2023-07-31 17:21:40 View