|Id||Title||Authors||Abstract▲||Picture||Thematic fields||Recommender||Reviewers||Submission date|
24 Jun 2021
The strength of parthood ties. Modelling spatial units and fragmented objects with the TSAR method – Topological Study of Archaeological RefittingSébastien Plutniak https://osf.io/q2e69
A practical computational approach to stratigraphic analysis using conjoinable material culture.Recommended by Hector A. Orengo based on reviews by Robert Bischoff, Matthew Peeples and 1 anonymous reviewer
The paper by Plutniak  presents a new method that uses refitting to help interpret stratigraphy using the topological distribution of conjoinable material culture. This new method opens up new avenues to the archaeological use of network analysis but also to assess the integrity of interpreted excavation layers. Beyond its evident applicability to standard excavation practice, the paper presents a series of characteristics that exemplify archaeological publication best practices and, as someone more versed in computational than in refitting studies I would like to comment upon.
It was no easy task to find adequate reviewers for this paper as it combines techniques and expertise that are not commonly found together in individual researchers. However, Plutniak, with help from three reviewers, particularly M. Peeples, a leading figure in archaeological applications of network science, makes a considerable effort to be accessible to non-specialist archaeologists. The core Topological Study of Archaeological Refitting (TSAR) method is freely accessible as the R package archeofrag, which is available at the Comprehensive R Archive Network (https://CRAN.R-project.org/package=archeofrag) that can be applied without the need to understand all its mathematical, graph theory and coding aspects. Beside these, an online interface including test data has been provided (https://analytics.huma-num.fr/Sebastien.Plutniak/archeofrag/), which aims to ease access to the method to those archaeologists inexperienced with R. Finally, supplementary material showing how to use the package and evaluating its potential through excellent examples is provided as both pdf and Rmw (Sweave) files. This is an important companion for the paper as it allows a better understanding of the methods presented in the paper and its practical application.
The author shows particular care in testing the potential and capabilities of the method. For example, a function is provided “frag.observer.failure” to test the robustness of the edge count method against the TSAR method, which is able to prove that TSAR can deal well with incomplete information. As a further step in this direction both simulated and real field-acquired data are used to test the method which further proves that archeofrag is not only able to quantitatively assess the mixture of excavated layers but to propose meaningful alternatives, which no doubt will add an increased methodological consistency and thoroughness to previous quantitative approaches to material refitting work, even when dealing with very complex stratigraphies.
All in all, this paper makes an important contribution to core archaeological practice through the use of innovative, reproducible and accessible computational methods. I fully endorse it for the conscious and solid methods it presents but also for its adherence to open publication practices. I hope that it can become of standard use in the reconstruction of excavated stratigraphical layers through conjoinable material culture.
 Plutniak, S. 2021. The Strength of Parthood Ties. Modelling Spatial Units and Fragmented Objects with the TSAR Method – Topological Study of Archaeological Refitting. OSF Preprints, q2e69, ver. 3 Peer-reviewed and recommended by PCI Archaeology. https://doi.org/10.31219/osf.io/q2e69.
|The strength of parthood ties. Modelling spatial units and fragmented objects with the TSAR method – Topological Study of Archaeological Refitting||Sébastien Plutniak||<p>Refitting and conjoinable pieces have long been used in archaeology to assess the consistency of discrete spatial units, such as layers, and to evaluate disturbance and post-depositional processes. The majority of current methods, despite their...||Computational archaeology, Taphonomy||Hector A. Orengo||2021-01-14 18:31:01||View|
21 Nov 2022
Removing Barriers to Reproducible Research in ArchaeologyEmma Karoune and Esther Plomp https://doi.org/10.5281/zenodo.7320029
Three levels of reproducible workflow remove barriers for archaeologists and increase accessibilityRecommended by Ben Marwick based on reviews by Sam Leggett, Cyler Conrad, Cheng Liu and Lisa Lodwick
Over the last decade, a small but growing community of archaeologists, from a diversity of intellectual and demographic backgrounds, have been striving for computational reproducibility in their published research. In their survey of the accomplishments of this thriving community, Emma Karoune and Esther Plomp (2022) analyzed the wide variety of approaches researchers have taken to enhance the reproducibility of their research. A key contribution of this paper is their excellent synthesis of diverse approaches into three levels of increasing complexity. This is helpful because it provides multiple entry points for researchers new to the challenge of fortifying their research. Many researchers assume that computational reproducibility is only achievable if they have a high degree of technical skill with computers, or is only necessary if their work is very computationally intensive. Karoune and Plomp give three compelling reasons why reproducibility is important for all archaeological research, and through their three levels they demonstrate that how these levels can be accomplished with basic, non-specialized computer skills and widely used free software. They showcase exemplary work from a variety of archaeologists to show how practical and achievable reproducible research is for all archaeologists. They advocate for archaeologists to use the most widely used and supported tools and services to support their reproducible research, such as the R and Python programming languages for data analysis, and Git and GitHub for collaboration.
This paper, with its extensive appendix including thoughtful responses to frequently asked questions about reproducible research in archaeology, is likely to have a wide reach and influence, beyond previous works on this topic that have largely focused on technical details. Karoune and Plomp have provided the on-ramp for a generation of archaeologists who will find their questions about reproducible research answered here. They will also find an agreeable entry point to reproducible research in one of the three levels described by the authors. Will every archaeologist embrace this way of working? Should they? The work of Leonelli (2018) can help us anticipate the answers to these questions. Leonelli asks where are the limits to reproducibility, and how do the characteristics of different ways of knowing affect the desirability of reproducibility? Leonelli's work invites us to consider that there will be archaeologists coming from different epistemic cultures for whom the motivations presented by Karoune and Plomp will not resonate. For example, archaeologists engaged in mostly hermeneutical social science and humanities research, who do little or no quantitative analysis and statistics, are unlikely to see reproducibility as meaningful or desirable for their work. We can describe these researchers as working in interpretative or constructivist epistemic cultures. In these cultures, the particulars of how an individual researcher engages with their subject are exclusive and unique, and they would argue it cannot be fully captured or shared in an meaningful way (Elman and Kapiszewski 2017). Here, knowledge is situational, emerging from a specific, once-off combination of people and circumstances. One example in archaeology is the chaîne opératoire approach of stone artefact analysis, which Monnier and Missal (2014:61) describe as "based upon the analyst's experience and intuition, and it is not replicable, nor quantifiable". To make sense of this example we can draw on Galison's (1997) concept of 'image traditions' and 'logic traditions'. An image tradition is a way of knowing that is qualitative, based on composing narratives from drawings and photographs. A logic tradition is based on the use of instruments and statistical methods to collect standardised quantitative data. Chaîne opératoire approaches fall into the image tradition, along with many other ways of working in archaeology that do not generate numbers or use them to support claims about the past. Archaeologists working in a logic tradition will find reproducible research to be more meaningful than those working in an image tradition.
We should be mindful not to claim that one epistemic culture is superior to another because reproducibility is not meaningful or attainable for researchers in one culture. Such a claim would threaten the plurality that is essential for the reliability of scientific knowledge (Massimi 2022). Instead we should identify those communities in archaeology where reproducible research is both meaningful and attainable, but has not yet been widely embraced. That is the where the most beneficial effects can be expected. According to Leonelli's (2018) framework, we can recognise these communities by a few basic characteristics. For example: they are doing computationally intensive archaeology, such as using or writing software to collect, simulate, analyse or visualise data; they are doing experimental archaeology; or they are making knowledge claims that are supported by tables of numeric data and data visualisations. Archaeologists whose work shares one or more of these characteristics will find the guidance provided here by Karoune and Plomp to be highly instructive and relevant, and stand the most to benefit from it.
But it is not only individual archaeological scientists that have potential to benefit from how Karoune and Plomp have lowered the barriers to reproducible research. An especially important implication of this paper is that by lowering the barriers to reproducible research, Karoune and Plomp help us all to lower barriers to participation in archaeology in general. Documenting our research transparently, and sharing our materials (such as data and code and so on) openly, can profoundly change how others can participate in archaeology. By doing this, we are enabling students and researchers elsewhere, for example in low and middle income locations, to use our materials in their teaching and learning. Other researchers and students can apply our methods to their data, and combine their data with ours to achieve syntheses beyond what a single project can do. Similarly, for archaeologists working with local, descendant or marginalized communities, the tools of reproducible research are vital for enabling community members to have full access to the archaeological process, and thus reproducibility may be considered a necessity for decolonising the discipline. Karoune and Plomp present the CARE principles (Carroll et al. 2020) to guide archaeologists in ensuring community control of data so that reproducibility can be ethically accomplished with community safety and well-being as a priority. This may have a profoundly positive impact on the demographics of archaeology, as it lowers the barriers of meaningful participation by people far beyond our immediate groups of collaborators.
Making archaeology more accessible is of critical importance in stemming the negative social impacts of pseudoarchaeologists, who often claim that archaeologists actively suppress the truth of the archaeological record through secrecy, elitism, and exclusiveness. The harm in this is twofold. First, that pseudoarchaeology typically erases Indigenous heritage by claiming that their past achievements were due to an ancient, extinct advanced civilization, not Indigenous people. These claims are often adopted by white supremacists to support racist and antisemitic conspiracy theories (Turner and Turner 2021), which sometimes leads to prejudice, physical violence, radicalization and extremism. A second type of harm that can come from claims of secrecy and elitism is it drains public trust in experts, leading to science denial. Not only trust in archaeologists, but trust in many kinds of experts, including those working on urgent contemporary issues such as public health and climate change. Karoune and Plomp's work is important here because it provides a practical and affordable pathway for archaeologists to fight claims of secrecy and elitism by sharing their work in ways that make it possible for non-academics to inspect the analyses and logic in detail. Claims of secrecy and elitism can be easily countered by openness, transparently and reproducibility by archaeologists. This is not only useful for tackling pseudoarchaeologists, but also in enacting an ethic of care, framing members of the public as people that not only care about archaeology as part of humanity's shared heritage, but also care for the construction of reliable interpretations of the archaeological record to provide secure and authentic foundations for their social identities and relationships (Wylie et al 2018; de la Bellacasa 2011). By striving for reproducible research in the way described by Karoune and Plomp, we are practicing a kind of reciprocal care among ourselves as archaeologists, and between archaeologists and members of the public as two communities who care about the human past.
Karoune, E., and Plomp, E. (2022). Removing Barriers to Reproducible Research in Archaeology. Zenodo, 7320029, ver. 5 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.5281/zenodo.7320029
de la Bellacasa, M. P. (2011). Matters of care in technoscience: Assembling neglected things. Social Studies of Science, 41(1), 85–106. https://doi.org/10.1177/0306312710380301
Carroll, S. R., Garba, I., Figueroa-Rodríguez, O. L., Holbrook, J., Lovett, R., Materechera, S., Parsons, M., Raseroka, K., Rodriguez-Lonebear, D., Rowe, R., Sara, R., Walker, J. D., Anderson, J., and Hudson, M. (2020). The CARE Principles for Indigenous Data Governance. Data Science Journal, 19(1), Article 1. https://doi.org/10.5334/dsj-2020-043
Elman, C., and Kapiszewski, D. (2017). Benefits and Challenges of Making Qualitative Research More Transparent. Inside Higher Ed 2017, http://web.archive.org/web/20220407064134/https://www.insidehighered.com/blogs/rethinking-research/benefits-and-challenges-making-qualitative-research-more-transparent (accessed 21 Oct, 2022).
Galison, P. (1997). Image and logic: a material culture of microphysics. Chicago (IL): University of Chicago Press.
Leonelli, S. (2018). Re-Thinking Reproducibility as a Criterion for Research Quality [preprint]. Available online: http://philsci-archive.pitt.edu/id/eprint/14352 (Accessed 21 Oct 2022).
Massimi, M. (2022). Perspectival realism. Oxford University Press.
Monnier, G. F., and Kele M.. "Another Mousterian debate? Bordian facies, chaîne opératoire technocomplexes, and patterns of lithic variability in the western European Middle and Upper Pleistocene." Quaternary International 350 (2014): 59-83. https://doi.org/10.1016/j.quaint.2014.06.053
Turner, D. D., and Turner, M. I. (2021). “I’m Not Saying It Was Aliens”: An Archaeological and Philosophical Analysis of a Conspiracy Theory. In A. Killin and S. Allen-Hermanson (Eds.), Explorations in Archaeology and Philosophy (pp. 7–24). Springer International Publishing. https://doi.org/10.1007/978-3-030-61052-4_2
Wylie, C., Neeley, K., and Ferguson, S. (2018). Beyond Technological Literacy: Open Data as Active Democratic Engagement? Digital Culture & Society, 4(2), 157–182. https://doi.org/10.14361/dcs-2018-0209
|Removing Barriers to Reproducible Research in Archaeology||Emma Karoune and Esther Plomp||<p>Reproducible research is being implemented at different speeds in different disciplines, and Archaeology is at the start of this journey. Reproducibility is the practice of reanalysing data by taking the same steps and producing the same or sim...||Computational archaeology||Ben Marwick||2022-06-07 10:02:46||View|
02 May 2023
Transmission of lithic and ceramic technical know-how in the Early Neolithic of central-western Europe: Shedding Light on the Social Mechanisms underlying Cultural TransitionSolène Denis, Louise Gomart, Laurence Burnez-Lanotte, Pierre Allard https://osf.io/gqnht/
A Thought Provoking Consideration of Craft in the NeolithicRecommended by Clare Burke based on reviews by Bogdana Milić and 1 anonymous reviewer
The pioneering work of Leroi-Gourhan introduced archaeologists to the concept of the chaîne opératoire, whereby, like his supervisor Mauss, Leroi-Gourhan proposed direct links between bodily actions and aspects of cultural identity. The chaîne opératoire offers a powerful conceptual tool with which to reconstruct and describe the technological practices undertaken by craftspeople, linking material objects to the cultural context in which crafts are learnt. Although initially applied to lithics, the concept today is well known in ceramic studies, as well as, other material crafts, in order to identify aspects of tradition and identity through ideas linked to technological style[3,4] and communities of practice.
Utilizing this approach, Denis et al. use the chaîne opératoire to look at both lithics and ceramics together from a diachronic viewpoint, to examine technical systems present over the transition between Linearbandkeramic (LBK) and post LBK Blicquy/Villeneuve-Saint German (BQY/VSG) timeframes. This much needed comparative and diachronic perspective, focuses on material from the sites of Vaux-et-Borset and Verlaine in Belgium, and has enabled the authors to consider the impact of changing social dynamics on these two crafts simultaneously.
The authors examine the ceramic and lithic assemblages from a macroscopic and morphological perspective in order to identify techniques of production. The data gathered testifies to the dominance of one production technique for each craft within the LBK. There is particularly striking homogeneity noted for the lithics that suggests the transmission of a single tradition over the Hesbaye area, whilst the ceramics display greater regional diversity. The picture alters somewhat for the BQY/VSG material where it seems there is an increase in the diversity of production techniques, with both the introduction of new techniques, as well as a degree of hybridization of earlier techniques to form new BQY/VSG chaînes opératoires that have LBK roots. The BQY/VSG diversity noted for the lithics is especially interesting, with the introduction of techniques that attest to increased expertise which the authors attest to the migration of an external group.
The results of this work have allowed Denis et al. to discuss multiple influences on the technical systems they identify. Rather than trying to fit the data within a single model, the authors demonstrate the need for nuance, considering the social changes associated with Neolithic migration and interactions, as multifaced and dynamic. As such, they are able to show not only the influence of contact with other groups, but that the apparent migration of external groups does not simply lead to the replacement of the crafting heritage already established at the sites they have examined.
In concluding the authors acknowledge, that as scholars push the existing state of knowledge (in this respect analysis of raw materials would make an especially important contribution), the picture presented in the paper may alter. Future work will hopefully fill in current gaps, particularly in terms of how far the trends identified extend, and the extent to which the lithic and ceramic pictures diversify on a broader geographical scale. It is certain that based on such results, future work should adopt the comparative approach presented by the authors, who have demonstrated its explanatory potential for understanding the technical and cultural groups we all study.
 Mauss, M. 2009 . Techniques, Technology and Civilisation. Edited and introduced by N. Schlanger. New York/Oxford: Durkheim Press/Berghahn Books.
 Lechtman, H. 1977. Style in Technology: some early thoughts. In H. Lechtman and R.S. Merrill (eds.) Material Culture: styles, organization and dynamics of technology. Proceedings of the American Ethnological Society 1975, St. Paul, 3-20.
 Gosselain, O. 1992. Technology and Style: Potters and Pottery Among Bafia of Cameroon. Man 27(3) 559- 586. htpps://doi.org/10.2307/2803929.
 Wenger, E. 1998. Communities of practice: Learning, meaning, and identity. Cambridge: Cambridge University Press.
 Denis, S., Gomart, L., Burnez-Lanotte, L. and Allard, P. (2023). Transmission of lithic and ceramic technical know-how in the Early Neolithic of central-western Europe: Shedding Light on the Social Mechanisms underlying Cultural Transition. OSF Preprints, gqnht, ver. 5 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.31219/osf.io/gqnht
|Transmission of lithic and ceramic technical know-how in the Early Neolithic of central-western Europe: Shedding Light on the Social Mechanisms underlying Cultural Transition||Solène Denis, Louise Gomart, Laurence Burnez-Lanotte, Pierre Allard||<p>Research on the European Neolithisation agrees that a process of colonisation throughout the sixth millennium BC underlies the spread of agricultural ways of life on the continent. From central to central-western Europe, this colonisation path ...||Ceramics, Europe, Lithic technology, Neolithic||Clare Burke||2022-11-18 12:03:55||View|
30 Sep 2022
Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF dataBharath Nair, Ismael Rodríguez Palomo, Bo Markussen, Carsten Wiuf, Sarah Fiddyment and Matthew Collins https://doi.org/10.1101/2022.03.13.483627
Assessing glutamine deamination in ancient parchment samplesRecommended by Beatrice Demarchi based on reviews by Maria Codlin and 3 anonymous reviewers
Data authenticity and approaches to data authentication are crucial issues in ancient protein research. The advent of modern mass spectrometry has enabled the detection of traces of ancient biomolecules contained in fossils, including protein sequences. However, detecting proteins in ancient samples does not equate to demonstrating their endogenous nature: instead, if the mechanisms that drive protein preservation and degradation are understood, then the extent of protein diagenesis can be used for evaluating preservational quality, which in turn may be related to the authenticity of the protein data.
The post-mortem deamidation of asparaginyl and glutamyl residues is a key degradation reaction, which can be assessed effectively on the basis of mass spectrometry data, and which has accrued a long history of research, both in terms of describing the mechanisms governing the reactions and with regard to the best strategies for assessing and quantifying the extent of glutamine (Gln) and asparagine (Asn) deamidation in ancient samples (Pal Chowdhury et al., 2019; Ramsøe et al., 2021, 2020; Schroeter and Cleland, 2016; Simpson et al., 2016; Solazzo et al., 2014; Welker et al., 2016; Wilson et al., 2012).
In their paper, Nair and colleagues (2022) build on this wealth of knowledge and present a tool for quantifying the extent of Gln deamidation in parchment. Parchment is a collagen-based material which can yield extraordinary insights into manuscript manufacturing practices in the past, as well as on the daily lives of the people who assembled and used them (“biocodicology”) (Fiddyment et al., 2021, 2019, 2015; Teasdale et al., 2017). Importantly, the extent of deamidation can be directly related to the quality of the parchment produced: rapid direct deamidation of Gln is induced by the liming process, therefore high extents of deamidation are linked to prolonged exposure to the high pH conditions which are typical of liming, thus implying lower-quality parchment.
Nair et al.’s approach focuses on collagen peptides which are typically detected during MALDI-TOF mass spectrometry analyses of parchment and build a simple three-step workflow able to yield an overall index of deamidation for a sample (the parchment glutamine index - PQI) 一 taking into account that different Gln residues degrade at different rates according to their micro-chemical environment. The first step involves pre-processing the MALDI spectra, since Nair et al. are specifically interested in maximising information which can be obtained by low-quality data. The second step builds on well-established methods for quantifying Q → E from MALDI-TOF data by modelling the convoluted isotope distributions (Wilson et al., 2012). Once relative rates of deamidation in selected peptides within a given sample are calculated, the third step uses a mixed effects model to combine the individual deamidation estimates and to obtain an overall estimate of the deamidation for a parchment sample (PQI).
The PQI can be used effectively for assessing parchment quality, as the authors show for the dataset from Orval Abbey. However, PQI could also have wider applications to the study of processed collagen, which is widely used in the food and pharmaceutical industries. In general, the study by Nair et al. is a welcome addition to a growing body of research on protein diagenesis, which will ultimately improve models for the assessment of the authenticity of biomolecular data in archaeology.
Chowdhury, P.M., Wogelius, R., Manning, P.L., Metz, L., Slimak, L., and Buckley, M. 2019. Collagen deamidation in archaeological bone as an assessment for relative decay rates. Archaeometry 61:1382–1398. https://doi.org/10.1111/arcm.12492
Fiddyment, S., Goodison, N.J., Brenner, E., Signorello, S., Price, K., and Collins, M.J.. 2021. Girding the loins? Direct evidence of the use of a medieval parchment birthing girdle from biomolecular analysis. bioRxiv. https://doi.org/10.1098/rsos.202055
Fiddyment,S., Holsinger, B., Ruzzier, C., Devine, A., Binois, A., Albarella, U., Fischer, R., Nichols, E., Curtis, A., Cheese, E., Teasdale, M.D., Checkley-Scott, C., Milner, S.J., Rudy, K.M., Johnson, E.J., Vnouček, J., Garrison, M., McGrory, S., Bradley, D.G., and Collins, M.J. 2015. Animal origin of 13th-century uterine vellum revealed using noninvasive peptide fingerprinting. Proc Natl Acad Sci U S A 112:15066–15071. https://doi.org/10.1073/pnas.1512264112
Fiddyment, S., Teasdale, M.D., Vnouček, J., Lévêque, É., Binois, A., and Collins, M.J. 2019. So you want to do biocodicology? A field guide to the biological analysis of parchment. Heritage Science 7:35. https://doi.org/10.1186/s40494-019-0278-6
Nair, B., Rodríguez Palomo, I., Markussen, B., Wiuf, C., Fiddyment, S., and Collins, M. Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data. BiorRxiv, 2022.03.13.483627, ver. 6 peer-reviewed and recommended by Peer community in Archaeology. https://doi.org/10.1101/2022.03.13.483627
Ramsøe, A., Crispin, M., Mackie, M., McGrath, K., Fischer, R., Demarchi, B., Collins, M.J., Hendy, J., and Speller, C. 2021. Assessing the degradation of ancient milk proteins through site-specific deamidation patterns. Sci Rep 11:7795. https://doi.org/10.1038/s41598-021-87125-x
Ramsøe, A., van Heekeren, V., Ponce, P., Fischer, R., Barnes, I., Speller, C., and Collins, M.J. 2020. DeamiDATE 1.0: Site-specific deamidation as a tool to assess authenticity of members of ancient proteomes. J Archaeol Sci 115:105080. https://doi.org/10.1016/j.jas.2020.105080
Schroeter, E.R., and Cleland, T.P. 2016. Glutamine deamidation: an indicator of antiquity, or preservational quality? Rapid Commun Mass Spectrom 30:251–255. https://doi.org/10.1002/rcm.7445
Simpson, J.P., Penkman, K.E.H., and Demarchi, B. 2016. The effects of demineralisation and sampling point variability on the measurement of glutamine deamidation in type I collagen extracted from bone. J Archaeol Sci 69: 29-38. https://doi.org/10.1016/j.jas.2016.02.002
Solazzo, C., Wilson, J., Dyer, J.M., Clerens, S., Plowman, J.E., von Holstein, I., Walton Rogers, P., Peacock, E.E., and Collins, M.J. 2014. Modeling deamidation in sheep α-keratin peptides and application to archeological wool textiles. Anal Chem 86:567–575. https://doi.org/10.1021/ac4026362
Teasdale, M.D., Fiddyment, S., Vnouček, J., Mattiangeli, V., Speller, C., Binois, A., Carver, M., Dand, C., Newfield, T.P., Webb, C.C., Bradley, D.G., and Collins M.J. 2017. The York Gospels: a 1000-year biological palimpsest. R Soc Open Sci 4:170988. https://doi.org/10.1098/rsos.170988
Welker, F., Soressi, M.A., Roussel, M., van Riemsdijk, I., Hublin, J.-J., and Collins, M.J. 2016. Variations in glutamine deamidation for a Châtelperronian bone assemblage as measured by peptide mass fingerprinting of collagen. STAR: Science & Technology of Archaeological Research 3:15–27. https://doi.org/10.1080/20548923.2016.1258825
Wilson, J., van Doorn, N.L., and Collins, M.J. 2012. Assessing the extent of bone degradation using glutamine deamidation in collagen. Anal Chem 84:9041–9048. https://doi.org/10.1021/ac301333t
|Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data||Bharath Nair, Ismael Rodríguez Palomo, Bo Markussen, Carsten Wiuf, Sarah Fiddyment and Matthew Collins||<p style="text-align: justify;">Parchment was used as a writing material in the Middle Ages and was made using animal skins by liming them with Ca(OH)<span class="math-tex">\( _2 \)</span>. During liming, collagen peptides containing Glutamine (Q)...||Bioarchaeology, Europe, Medieval, Zooarchaeology||Beatrice Demarchi||2022-03-22 12:54:10||View|
26 Oct 2022
Technological analysis and experimental reproduction of the techniques of perforation of quartz beads from the Ceramic period in the AntillesMadeleine Raymond, Pierrick Fouéré, Ronan Ledevin, Yannick Lefrais and Alain Queffelec https://osf.io/preprints/socarxiv/a5tgp
Using Cactus Thorns to Drill Quartz: A Proof of ConceptRecommended by Donatella Usai and Jonathan Hanna based on reviews by Kozuch Laura, Viola Stefano and 1 anonymous reviewer
Quartz adornments (beads, pendants, etc.) are frequent artifacts found in the Caribbean, particularly from Early Ceramic Age contexts (~500 BC-AD 700). As a form of specialization, these are sometimes seen as indicative of greater social complexity and craftsmanship during this time. Indeed, ethnographic analogy has purported that such stone adornments require enormous inputs of time and labor, as well as some technological sophistication with tools hard-enough to create the holes (e.g., metal or diamonds). However, given these limitations, one would expect unfinished beads to be a common artifact in the archaeological record. Yet, whereas unworked/raw materials are often found, beads with partial/unfinished perforations are not.
|Technological analysis and experimental reproduction of the techniques of perforation of quartz beads from the Ceramic period in the Antilles||Madeleine Raymond, Pierrick Fouéré, Ronan Ledevin, Yannick Lefrais and Alain Queffelec||<p style="text-align: justify;">Personal ornaments are a very specific kind of material production in human societies and are particularly valuable artifacts for the archaeologist seeking to understand past societies. In the Caribbean, Early Ceram...||Lithic technology, Neolithic, South America, Symbolic behaviours, Traceology||Donatella Usai||2022-09-06 14:01:51||View|
12 Dec 2022
Can growth in captivity alter the calcaneal microanatomy of a wild ungulate?Romain Cottereau, Katia Ortiz, Yann Locatelli, Alexandra Houssaye*, Thomas Cucchi* https://doi.org/10.1101/2022.08.22.504790
Mobility in pigs: A microanatomical perspectiveRecommended by Nimrod Marom based on reviews by Max Price and Ignacio A. Lazagabaster
Pig domestication and husbandry involved complex processes of introduction, introgression, and feralization that challenge our understanding of human/suid interactions in ancient times. This challenge is a constant stimulus for the development of novel methods and techniques to illuminate aspects of early pig husbandry, such as human-induced changes in mobility. Using geometric morphometrics, Harbers et al. (2020) have shown that the calcaneus records a plastic response to reduced mobility and hence to human management. In the present study, Cottereau et al. (2022) explore the possibility that a similar plastic response to different mobility regimes can be observed in the microanatomy of the calcaneus using CT scans. Their research utilizes a sample of calcanei obtained from Mesolithic specimens, and also from recent suids kept in natural habitat, large pen, and stall. Their results suggest that bone microanatomy is more affected by population differences than by mobility patterns, as illustrated by the similarity between Mesolitic boar calcanei and their difference from recent, free wild boar.
Cottereau R, Ortiz K, Locatelli Y, Houssaye A, Cucchi T (2022), bioRxiv, 504790, ver. 5 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.1101/2022.08.22.504790
Harbers H, Neaux D, Ortiz K, Blanc B, Laurens F, Baly I, Callou C, Schafberg R, Haruda A, Lecompte F, Casabianca F, Studer J, Renaud S, Cornette R, Locatelli Y, Vigne J-D, Herrel A, Cucchi T (2020) The mark of captivity: plastic responses in the ankle bone of a wild ungulate (Sus scrofa). Royal Society Open Science, 7, 192039. https://doi.org/10.1098/rsos.192039
|Can growth in captivity alter the calcaneal microanatomy of a wild ungulate?||Romain Cottereau, Katia Ortiz, Yann Locatelli, Alexandra Houssaye*, Thomas Cucchi*||<p style="text-align: justify;">Reduced mobility associated with captivity induce changes in biomechanical stress on the skeleton of domesticated animals. Due to bone plasticity, the morphology and the internal structure of the bones can respond t...||Neolithic, Zooarchaeology||Nimrod Marom||2022-08-26 20:29:01||View|
17 Jun 2022
Light in the Cave: Opal coating detection by UV-light illumination and fluorescence in a rock art context. Methodological development and application in Points Cave (Gard, France)Marine Quiers, Claire Chanteraud, Andréa Maris-Froelich, Émilie Chalmin-Aljanabi, Stéphane Jaillet, Camille Noûs, Sébastien Pairis, Yves Perrette, Hélène Salomon, Julien Monney https://hal.archives-ouvertes.fr/hal-03383193v5
New method for the in situ detection and characterisation of amorphous silica in rock art contextsRecommended by Aitor Ruiz-Redondo based on reviews by Alain Queffelec, Laure Dayet and 1 anonymous reviewer
Silica coating developed in cave art walls had an impact in the preservation of the paintings themselves. Despite it still exists a controversy about whether or not the effects contribute to the preservation of the artworks; it is evident that identifying these silica coatings would have an impact to assess the taphonomy of the walls and the paintings preserved on them. Unfortunately, current techniques -especially non-invasive ones- can hardly address amorphous silica characterisation. Thus, its presence is often detected on laboratory observations such as SEM or XRD analyses. In the paper “Light in the Cave: Opal coating detection by UV-light illumination and fluorescence in a rock art context - Methodological development and application in Points Cave (Gard, France)”, Quiers and collaborators propose a new method for the in situ detection and characterisation of amorphous silica in a rock art context based on UV laser-induced fluorescence (LIF) and UV illumination .
The results from both methods presented by the authors are convincing for the detection of U-silica mineralisation (U-opal in the specific case of study presented). This would allow access to a fast and cheap method to identify this kind of formations in situ in decorated caves. Beyond the relationship between opal coating and the preservation of the rock art, the detection of silica mineralisation can have further implications. First, it can help to define spot for sampling for pigment compositions, as well as reconstruct the chronology of the natural history of the caves and its relation with the human frequentation and activities. In conclusion, I am glad to recommend this original research, which offers a new approach to the identification of geological processes that affect -and can be linked with- the Palaeolithic cave art.
 Quiers, M., Chanteraud, C., Maris-Froelich, A., Chalmin-Aljanabi, E., Jaillet, S., Noûs, C., Pairis, S., Perrette, Y., Salomon, H., Monney, J. (2022) Light in the Cave: Opal coating detection by UV-light illumination and fluorescence in a rock art context. Methodological development and application in Points Cave (Gard, France). HAL, hal-03383193, ver. 5 peer-reviewed and recommended by Peer community in Archaeology. https://hal.archives-ouvertes.fr/hal-03383193v5
|Light in the Cave: Opal coating detection by UV-light illumination and fluorescence in a rock art context. Methodological development and application in Points Cave (Gard, France)||Marine Quiers, Claire Chanteraud, Andréa Maris-Froelich, Émilie Chalmin-Aljanabi, Stéphane Jaillet, Camille Noûs, Sébastien Pairis, Yves Perrette, Hélène Salomon, Julien Monney||<p style="text-align: justify;">Silica coatings development on rock art walls in Points Cave questions the analytical access to pictorial matter specificities (geochemistry and petrography) and the rock art conservation state in the context of pig...||Archaeometry, Europe, Rock art, Taphonomy, Upper Palaeolithic||Aitor Ruiz-Redondo||2021-10-25 11:12:48||View|
15 Aug 2021
Ran-thok and Ling-chhom: indigenous grinding stones of Shertukpen tribes of Arunachal Pradesh, IndiaNorbu Jamchu Thongdok, Gibji Nimasow & Oyi Dai Nimasow https://doi.org/10.5281/zenodo.5118675
An insight into traditional method of food production in IndiaRecommended by Otis Crandell based on reviews by Antony Borel, Atefeh Shekofteh, Andrea Squitieri, Birgül Ögüt, Atefe Shekofte and 1 anonymous reviewer
This paper  covers an interesting topic in that it presents through ethnography an insight into a traditional method of food production which is gradually declining in use. In addition to preserving traditional knowledge, the ethnographic study of grinding stones has the potential for showing how similar tools may have been used by people in the past, particularly from the same geographic region.
 Thongdok Norbu J., Nimasow Gibji, Nimasow Oyi D. (2021) Ran-thok and Ling-chhom: indigenous grinding stones of Shertukpen tribes of Arunachal Pradesh, India. Zenodo, 5118675, ver. 4 peer-reviewed and recommended by PCI Archaeo. doi: https://doi.org/10.5281/zenodo.5118675
|Ran-thok and Ling-chhom: indigenous grinding stones of Shertukpen tribes of Arunachal Pradesh, India||Norbu Jamchu Thongdok, Gibji Nimasow & Oyi Dai Nimasow||<p style="text-align: justify;">The Shertukpens are an Indigenous tribal group inhabiting the western and southern parts of Arunachal Pradesh, Northeast India. They are accomplished carvers of carving wood and stone. The paper aims to document the...||Antiquity, Asia, Environmental archaeology, Lithic technology, Peopling, Raw materials||Otis Crandell||2021-02-10 10:26:12||View|
14 Nov 2022
Raphana of the Decapolis and its successor Arpha - The search for an eminent Greco-Roman CityJens Kleb https://doi.org/10.6084/m9.figshare.20550021
Cross-comparison of classical sources, explorer and scientific reports and maps in the search of an ancient city: The example of Raphana of the DecapolisRecommended by Luc Doyon based on reviews by Rocco Palermo and Francesca Mazzilli
Establishing the precise location of ancient cities constitutes a challenging task that requires the implementation of multi-disciplinary approaches. In his manuscript entitled “Raphana of the Decapolis and its successor Arpha: The search of an eminent Greco-Roman city”, Kleb (2022) proposes a convincing argument building on in-depth research of classical literary sources, literature review of explorer accounts and scientific publications from the 19th and 20th century as well as analysis of old and new maps, aerial photographs, and satellite images. This research report clearly emphasizes the importance of undertaking systematic interdisciplinary work on the topic to mitigate the uncertainties associated with the identification of Raphana, the Decapolis city first mentioned by Pliny the Elder.
The Decapolis refers to a group of ten cities of Hellenistic traditions located on the eastern borders of the Roman Empire. This group of cities plays an important role in research that aims to contextualize the Judaean and Galilean history and to investigate urban centers in which different local and Greco-Roman influences met (Lichtenberger, 2021). While the location of most of the Decapolis cities is known and is (or was) subjected to systematic archaeological investigations (e.g., Eisenberg and Kowalewska, 2022; Makhadmeh et al., 2020; Shiyab et al., 2019), the location of others remain speculative. This is the case of Raphana for which the precise location remains difficult to establish owing in part to numerous name changes, limited information on the city structure, architecture, and size, etc.
The research presented by Kleb (2022) has some merits, which is emphasized here, although the report is presented in an unusual format compared to traditional scientific articles, i.e., introduction, research background, methodology, results, and discussion. First, the extensive review of classical works allows the reader to gain a historical perspective on the change of names from Raepta/Raphana to Arpha/Arefa. The author argues these different names likely refer to a single location. Second, the author combs through an impressive literature from the 19th and 20th century and emphasize how some assumptions by explorers who visited the region were introduced in the scientific literature and remained unchallenged. Finally, the author gathers a remarkable quantity of old and new maps of the Golan, el-Ledja and Hauran regions and compare them with multiple lines of evidence to hypothesize that the location of Raphana may lie near Ar-Rafi’ah, also known as Bir Qassab, in the Ard el Fanah plain, a conclusion that now requires to be tested through fieldwork investigations.
Kleb, J. (2022) Raphana of the Decapolis and its successor Arpha - The search for an eminent Greco-Roman City. Figshare, 20550021, ver. 4 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.6084/m9.figshare.20550021
Eisenberg, M. and Kowalewska, A. (2022). Funerary podia of Hippos of the Decapolis and the phenomenon in the Roman world. J. Roman Archaeol. 35, 107–138. https://doi.org/10.1017/S1047759421000465
Lichtenberger, A. (2021). The Decapolis, in: A Companion to the Hellenistic and Roman Near East. John Wiley & Sons, Ltd, pp. 213–222. https://doi.org/10.1002/9781119037354.ch18
Makhadmeh, A., Al-Badarneh, M., Rawashdeh, A. and Al-Shorman, A. (2020). Evaluating the carrying capacity at the archaeological site of Jerash (Gerasa) using mathematical GIS modeling. Egypt. J. Remote Sens. Space Sci. 23, 159–165. https://doi.org/10.1016/j.ejrs.2018.09.002
Shiyab, A., Al-Shorman, A., Turshan, N., Tarboush, M., Alawneh, F. and Rahabneh, A. (2019). Investigation of late Roman pottery from Gadara of the Decapolis, Jordan using multi-methodic approach. J. Archaeol. Sci. Rep. 25, 100–115. https://doi.org/10.1016/j.jasrep.2019.04.003
|Raphana of the Decapolis and its successor Arpha - The search for an eminent Greco-Roman City||Jens Kleb||<p style="text-align: justify;">This research paper presents a detailed analysis of ancient literature and archaeological and geographical research until the present day for an important ancient location in the southern part of Syria. This one had...||Landscape archaeology, Mediterranean, Spatial analysis, Theoretical archaeology||Luc Doyon||2021-12-30 13:54:32||View|
11 Jan 2022
Tektite geoarchaeology in mainland Southeast AsiaBen Marwick, Son Thanh Pham, Rachel Brewer, Li-Ying Wang https://doi.org/10.31235/osf.io/93fpa
Tektites as chronological markers: after careful geoarchaeological validation only!Recommended by Alain Queffelec and Shanti Pappu based on reviews by Sheila Mishra, Toshihiro Tada, Mike Morley and 1 anonymous reviewer
Tektites, a naturally occurring glass produced by major cosmic impacts and ejected at long distances, are known from five impacts worldwide . The presence of this impact-generated glass, which can be dated in the same way as a volcanic rock, has been used to date archaeological sites in several regions of the world. This paper by Marwick and colleagues  reviews and adds new data on the use and misuse of this specific material as a chronological marker in Australia, East and Southeast Asia, where an impact dated to 0.78 Ma created and widely distributed tektites. This material, found in archaeological excavations in China, Laos, Thaïland, Australia, Borneo, and Vietnam, has been used to date layers containing lithic artifacts, sometimes creating a strong debate about the antiquity of the occupation and lithic production in certain regions.
The review of existing data shows that geomorphological data and stratigraphic integrity can be questioned at many sites that have yielded tektites. The new data provided by this paper for five archaeological sites located in Vietnam confirm that many deposits containing tektites are indeed lag deposits and that these artifacts, thus in secondary position, cannot be considered to date the layer. This study also emphasizes the general lack of other dating methods that would allow comparison with the tektite age. In the Vietnamese archaeological sites presented here, discrepancies between methods, and the presence of historical artifacts, confirm that the layers do not share similar age with the cosmic impact that created the tektites.
Based on this review and these new results, and following previous propositions , Marwick and colleagues conclude that, if tektites can be used as chronological markers, one has to prove that they are in situ. They propose that geomorphological assessment of the archaeological layer as primary deposit must first be attained, in addition to several parameters of the tektites themselves (shape, size distribution, chemical composition). Large error can be made by using only tektites to date an archaeological layer, and this material should not be used solely due to risks of high overestimation of the age of the archaeological production.
 Rochette, P., Beck, P., Bizzarro, M., Braucher, R., Cornec, J., Debaille, V., Devouard, B., Gattacceca, J., Jourdan, F., Moustard, F., Moynier, F., Nomade, S., Reynard, B. (2021). Impact glasses from Belize represent tektites from the Pleistocene Pantasma impact crater in Nicaragua. Communications Earth & Environment, 2(1), 1–8, https://doi.org/10.1038/s43247-021-00155-1
 Marwick, B., Son, P. T., Brewer, R., Wang, L.-Y. (2022). Tektite geoarchaeology in mainland Southeast Asia. SocArXiv, 93fpa, ver. 6 peer-reviewed and recommended by PCI Archaeology, https://doi.org/10.31235/osf.io/93fpa.
 Tada, T., Tada, R., Chansom, P., Songtham, W., Carling, P. A., Tajika, E. (2020). In Situ Occurrence of Muong Nong-Type Australasian Tektite Fragments from the Quaternary Deposits near Huai Om, Northeastern Thailand. Progress in Earth and Planetary Science 7(1), 1–15, https://doi.org/10.1186/s40645-020-00378-4
|Tektite geoarchaeology in mainland Southeast Asia||Ben Marwick, Son Thanh Pham, Rachel Brewer, Li-Ying Wang||<p>Tektites formed by an extraterrestrial impact event in Southeast Asia at 0.78 Ma have been found in geological contexts and archaeological sites throughout Australia, East and Southeast Asia. At some archaeological sites, especially in Bose Bas...||Asia, Geoarchaeology||Alain Queffelec||2021-08-14 18:04:18||View|
Philip Van Peer