|Id||Title||Authors||Abstract▲||Picture||Thematic fields||Recommender||Reviewers||Submission date|
20 Jul 2022
Faunal remains from the Upper Paleolithic site of Nahal Rahaf 2 in the southern Judean Desert, IsraelNimrod Marom, Dariya Lokshin Gnezdilov, Roee Shafir, Omry Barzilai, Maayan Shemer https://www.biorxiv.org/content/10.1101/2022.05.17.492258v4
New zooarchaeological data from the Upper Palaeolithic site of Nahal Rahaf 2, IsraelRecommended by Ruth Blasco based on reviews by Ana Belén Galán and Joana Gabucio
The Levantine Corridor is considered a crossing point to Eurasia and one of the main areas for detecting population flows (and their associated cultural and economic changes) during the Pleistocene. This area could have been closed during the most arid periods, giving rise to processes of population isolation between Africa and Eurasia and intermittent contact between Eurasian human communities [1,2].
Zooarchaeological studies of the early Upper Palaeolithic assemblages constitute an important source of knowledge about human subsistence, making them central to the debate on modern behaviour. The Early Upper Palaeolithic sequence in the Levant includes two cultural entities – the Early Ahmarian and the Levantine Aurignacian. This latter is dated to 39-33 ka and is considered a local adaptation of the European Aurignacian techno-complex. In this work, the authors present a zooarchaeological study of the Nahal Rahaf 2 (ca. 35 ka) archaeological site in the southern Judean Desert in Israel .
Zooarchaeological data from the early Upper Paleolithic desert regions of the southern Levant are not common due to preservation problems of non-lithic finds. In the case of Nahal Rahaf 2, recent excavation seasons brought to light a stratigraphical sequence composed of very well-preserved archaeological surfaces attributed to the 'Arkov-Divshon' cultural entity, which is associated with the Levantine Aurignacian.
This study shows age-specific caprine (Capra cf. Capra ibex) hunting on prime adults and a generalized procurement of gazelles (Gazella cf. Gazella gazella), which seem to have been selectively transported to the site and processed for within-bone nutrients. An interesting point to note is that the proportion of goats increases along the stratigraphic sequence, which suggests to the authors a specialization in the economy over time that is inversely related to the occupational intensity of use of the site.
It is also noteworthy that the materials represent a large sample compared to previous studies from the Upper Paleolithic of the Judean Desert and Negev.
In summary, this manuscript contributes significantly to the study of both the palaeoenvironment and human subsistence strategies in the Upper Palaeolithic and provides another important reference point for evaluating human hunting adaptations in the arid regions of the southern Levant.
 Bermúdez de Castro, J.-L., Martinon-Torres, M. (2013). A new model for the evolution of the human pleistocene populations of Europe. Quaternary Int. 295, 102-112. https://doi.org/10.1016/j.quaint.2012.02.036
 Bar-Yosef, O., Belfer-Cohen, A. (2010). The Levantine Upper Palaeolithic and Epipalaeolithic. In Garcea, E.A.A. (Ed), South-Eastern Mediterranean Peoples Between 130,000 and 10,000 Years Ago. Oxbow Books, pp. 144-167.
 Marom, N., Gnezdilov, D. L., Shafir, R., Barzilai, O. and Shemer, M. (2022). Faunal remains from the Upper Paleolithic site of Nahal Rahaf 2 in the southern Judean Desert, Israel. BioRxiv, 2022.05.17.492258, ver. 4 peer-reviewed and recommended by Peer community in Archaeology. https://www.biorxiv.org/content/10.1101/2022.05.17.492258v4
|Faunal remains from the Upper Paleolithic site of Nahal Rahaf 2 in the southern Judean Desert, Israel||Nimrod Marom, Dariya Lokshin Gnezdilov, Roee Shafir, Omry Barzilai, Maayan Shemer||<p>Nahal Rahaf 2 (NR2) is an Early Upper Paleolithic (ca. 35 kya) rock shelter in the southern Judean Desert in Israel. Two excavation seasons in 2019 and 2020 revealed a stratigraphical sequence composed of intact archaeological surfaces attribut...||Upper Palaeolithic, Zooarchaeology||Ruth Blasco||Joana Gabucio||2022-05-19 06:16:47||View|
02 Sep 2023
Towards a Mobile 3D Documentation Solution. Video Based Photogrammetry and iPhone 12 Pro as Fieldwork Documentation ToolsNikolai Paukkonen https://doi.org/10.5281/zenodo.7954534
The Potential of Mobile 3D Documentation using Video Based Photogrammetry and iPhone 12 ProRecommended by Ying Tung Fung based on reviews by Dominik Hagmann, Sebastian Hageneuer and 1 anonymous reviewer
I am pleased to recommend the paper titled "Towards a Mobile 3D Documentation Solution. Video Based Photogrammetry and iPhone 12 Pro as Fieldwork Documentation Tools" for consideration and publication as a preprint (Paukkonen, 2023). The paper addresses a timely and relevant topic within the field of archaeology and offers valuable insights into the evolving landscape of 3D documentation methods.
The advances in technology over the past decade have brought about significant changes in archaeological documentation practices. This paper makes a valuable contribution by discussing the emergence of affordable equipment suitable for 3D fieldwork documentation. Given the constraints that many archaeologists face with limited resources and tight timeframes, the comparison between photogrammetry based on a video captured by a DJI Osmo Pocket gimbal camera and iPhone 12 Pro LiDAR scans is of great significance.
The research presented in the paper showcases a practical application of these new technologies in the context of a Finnish Early Modern period archaeological project. By comparing the acquisition processes and evaluating the accuracy, precision, ease of use, and time constraints associated with each method, the authors provide a comprehensive assessment of their potential for archaeological fieldwork. This practical approach is a commendable aspect of the paper, as it not only explores the technical aspects but also considers the practical implications for archaeologists on the ground.
Furthermore, the paper appropriately addresses the limitations of these technologies, specifically highlighting their potential inadequacy for projects requiring a higher level of precision, such as Neolithic period excavations. This nuanced perspective adds depth to the discussion and provides a realistic portrayal of the strengths and limitations of the new documentation methods.
In conclusion, the paper offers valuable insights into the future of 3D field documentation for archaeologists. The authors' thorough evaluation and practical approach make this study a valuable resource for researchers, practitioners, and professionals in the field. I believe that this paper would be an excellent addition to PCIArchaeology and would contribute significantly to the ongoing dialogue within the archaeological community.
Paukkonen, N. (2023) Towards a Mobile 3D Documentation Solution. Video Based Photogrammetry and iPhone 12 Pro as Fieldwork Documentation Tools, Zenodo, 8281263, ver. 3 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.5281/zenodo.8281263
|Towards a Mobile 3D Documentation Solution. Video Based Photogrammetry and iPhone 12 Pro as Fieldwork Documentation Tools||Nikolai Paukkonen||<p>New affordable equipment suitable for 3D fieldwork documentation has appeared during the last years. Both photogrammetry and laser scanning are becoming affordable for archaeologists, who often work with limited resources and tight time constra...||Europe, Post-medieval, Remote sensing||Ying Tung Fung||2023-05-21 21:32:33||View|
06 Oct 2023
From paper to byte: An interim report on the digital transformation of two thing editionsAuth. Frederic; Rösler, Katja; Domscheit, Wenke; Hofmann, Kerstin P. https://doi.org/10.5281/zenodo.7304578
Revitalising archaeological corpus publications through digitisation – the Corpus der römischen Funde im europäischen Barbaricum and the Conspectus Formarum Terrae Sigillatae Modo Confectae as exemplary casesRecommended by Felix Riede, Sébastien Plutniak and Shumon Tobias Hussain based on reviews by Sebastian Hageneuer and Adéla Sobotkova
The paper entitled “From paper to byte: An interim report on the digital transformation of two thing editions” submitted by Frederic Auth and colleagues discusses how those rich and often meticulously illustrated catalogues of particular find classes that exist in many corners of archaeology can be brought to the cutting edge of contemporary research through digitisation. This paper was first developed for a special conference session convened at the EAA annual meeting in 2021 and is intended for an edited volume on the topic of typology, taxonomy, classification theory, and computational approaches in archaeology.
Auth et al. (2023) begin with outlining the useful notion of the ‘thing-edition’ originally coined by Kerstin Hofmann in the context of her work with the many massive corpora of finds that have characterised, in particular, earlier archaeological knowledge production in Germany (Hofmann et al. 2019; Hofmann 2018). This work critically examines changing trends in the typological characterisation and recording of various find categories, their theoretical foundations or lack thereof and their legacy on contemporary practice. The present contribution focuses on what happens with such corpora when they are integrated into digitisation projects, specifically the efforts by the German Archaeological Institute (DAI), the so-called iDAI.world and in regard to two Roman-era material culture groups, the Corpus der römischen Funde im europäischen Barbaricum (Roman finds from beyond the empire’s borders in eight printed volumes covering thousands of finds of various categories), and the Conspectus Formarum Terrae Sigillatae Modo Confectae (Roman plain ware).
Drawing on Bruno Latour’s (2005) actor-network theory (ANT), Auth et al. discuss and reflect on the challenges met and choices to be made when thing-editions are to be transformed into readily accessible data, that is as linked to open, usable data. The intellectual and infrastructural workload involved in such digitisation projects is not to be underestimated. Here, the contribution by Auth et al. excels in the manner that it does not present the finished product – the fully digitised corpora – but instead offers a glimpse ‘under the hood’ of the digitisation process as an interaction between analogue corpus, research team, and the technologies at hand. These aspects were rarely addressed in the literature, rooted in the 1970s early work (Borillo and Gardin 1974; Gaines 1981), on archaeological computerised databases, focused on technical dimensions (see Rösler 2016 for an exception). Their paper can so also be read in the broader context of heterogeneous computer-assisted knowledge ecologies and ‘mangles of practice’ (see Pickering and Guzik 2009) in which practitioners and technological structures respond to each other’s needs and attempt to cooperate in creative ways. As such, Auth et al.’s considerations not least offer valuable resources for Science and Technology Studies-inspired discussions on the cross-fertilization of archaeological theory, practice and currently emerging material and virtual research infrastructures and can be read in conjunction to Gavin Lucas’ (2022) paper on ‘machine epistemology’ due to appear in the same volume.
Perhaps more importantly, however, the work by Auth and colleagues (2023) exemplifies the due diligence required in not merely turning a catalogue from paper to digital document but in transforming such catalogues into long-lasting and patently usable repositories of generations of scholars to come. Deploying the Latourian notions of trade-off and recursive reference, Auth et al. first examine the structure, strengths, and weakness of the two corpora before moving on to showing how the freshly digitised versions offer new and alternative ways of analysing the archaeological material at hand, notably through immediate visualisation opportunities, through ceramic form combinations, and relational network diagrams based on the data inherent in the respective thing-editions.
Catalogues including basic descriptions and artefact illustrations exist for most if not all archaeological periods. They constitute an essential backbone of archaeological work as repeated access to primary material is impractical if not impossible. The catalogues addressed by Auth et al. themselves reflect major efforts on behalf of archaeological experts to arrive at clear and operational classifications in a pre-computerised era. The continued and expanded efforts by Auth and colleagues build on these works and clearly demonstrate the enormous analytical potential to make such data not merely more accessible but also more flexibly interoperable. Their paper will therefore be an important reference for future work with similar ambitions facing similar challenges.
Auth, Frederic, Katja Rösler, Wenke Domscheit, and Kerstin P. Hofmann. 2023. “From Paper to Byte: A Workshop Report on the Digital Transformation of Two Thing Editions.” Zenodo. https://doi.org/10.5281/zenodo.8214563
Borillo, Mario, and Jean-Claude Gardin. 1974. Les Banques de Données Archéologiques. Marseille: Éditions du CNRS.
Gaines, Sylvia W., ed. 1981. Data Bank Applications in Archaeology. Tucson, AZ: University of Arizona Press.
Hofmann, Kerstin P. 2018. “Dingidentitäten Und Objekttransformationen. Einige Überlegungen Zur Edition von Archäologischen Funden.” In Objektepistemologien. Zum Verhältnis von Dingen Und Wissen, edited by Markus Hilgert, Kerstin P. Hofmann, and Henrike Simon, 179–215. Berlin Studies of the Ancient World 59. Berlin: Edition Topoi. https://dx.doi.org/10.17171/3-59
Hofmann, Kerstin P., Susanne Grunwald, Franziska Lang, Ulrike Peter, Katja Rösler, Louise Rokohl, Stefan Schreiber, Karsten Tolle, and David Wigg-Wolf. 2019. “Ding-Editionen. Vom Archäologischen (Be-)Fund Übers Corpus Ins Netz.” E-Forschungsberichte des DAI 2019/2. E-Forschungsberichte Des DAI. Berlin: Deutsches Archäologisches Institut. https://publications.dainst.org/journals/efb/2236/6674
Latour, Bruno. 2005. Reassembling the Social: An Introduction to Actor-Network-Theory. Oxford: Oxford University Press.
Lucas, Gavin. 2022. “Archaeology, Typology and Machine Epistemology.” Zenodo. https://doi.org/10.5281/zenodo.7622162
Pickering, Andrew, and Keith Guzik, eds. 2009. The Mangle in Practice: Science, Society, and Becoming. The Mangle in Practice. Science and Cultural Theory. Durham, NC: Duke University Press.
Rösler, Katja. 2016. “Mit Den Dingen Rechnen: ‚Kulturen‘-Forschung Und Ihr Geselle Computer.” In Massendinghaltung in Der Archäologie. Der Material Turn Und Die Ur- Und Frühgeschichte, edited by Kerstin P. Hofmann, Thomas Meier, Doreen Mölders, and Stefan Schreiber, 93–110. Leiden: Sidestone Press.
|From paper to byte: An interim report on the digital transformation of two thing editions||Auth. Frederic; Rösler, Katja; Domscheit, Wenke; Hofmann, Kerstin P.||<p>One specific form of publication for archaeological objects are catalogues, atlases and corpora. Kerstin Hofmann has introduced the term ‘Ding-Editionen’ (thing editions) for this category of publications that present their data in lists, short...||Antiquity, Computational archaeology, Dating, Theoretical archaeology||Felix Riede||2022-11-08 16:00:49||View|
26 Sep 2022
The management of symbolic raw materials in the Late Upper Paleolithic of South-Western France: a shell ornaments perspectiveSolange Rigaud, John O’Hara, Laurent Charles, Elena Man-Estier, Patrick Paillet https://doi.org/10.31235/osf.io/z7pqg
Caching up with the study of the procurement of symbolic raw materials in the Upper PalaeolithicRecommended by Beatrice Demarchi based on reviews by Begoña Soler Mayor , Catherine Dupont and Lawrence Straus
The manuscript "The management of symbolic raw materials in the Late Upper Paleolithic of South-Western France: a shell ornaments perspective" by Solange Rigaud and colleagues (Rigaud et al. 2022) is a perfect demonstration that appropriate scientific methodologies can be used effectively in order to enhance the historical value of findings from “old” collections, despite the lack of secure stratigraphic and contextual data. The shell assemblage (n = 377) investigated here (from Rochereil, Dordogne) had been excavated during the first half of the 20th century (Jude 1960) and reported in 1993 (Taborin 1993), but only this recent analysis revealed that it was composed of largely unmodified mollusc shells, most of allochthonous origin. Rigaud et al. interpret this finding as the raw materials used to produce personal ornaments. This is especially significant, because the focus of research has been on the manufacture, use and exchange of personal ornaments in prehistory, much less so on the procurement of the raw materials. As such, the manuscript adds substantially to the growing literature on Magdalenian social networks.
The authors carried out detailed taxonomic analysis based on morphological and morphometric characteristics and identified at least nine different species, including Dentalium sp., Ocenebra erinaceus, Tritia reticulata and T. gibbosula, as well as some bivalve specimens (Mytilus, Glycymeris, Spondylus, Pecten). Most of the species are commonly found in personal ornament assemblages from the Magdalenian, reflecting intentional selection (also shown by the size sorting of some of the taxa), and cultural continuity. However, microscopic examinations revealed securely-identified anthropogenic modifications on a very limited number of specimens: one Glycymeris valve (used as an ochre container), one Cardiidae valve (presence of a groove), one perforated Tritia gibbosula and two perforated Tritia reticulata bearing striations. The authors interpret this combination of anthropogenic vs natural “signals” as signifying that the assemblage represents raw material selected and stored for further processing.
Assessing the provenance and age of the shells is therefore paramount: the shells found at Rochereil belong to species that can be found on both the Atlantic and Mediterranean coasts. Assuming that molluscan taxa distribution in the past is comparable to that for the present day, this implies the exploitation of two catchment areas and long-distance transportation to the site: taking sea-level changes into account, during the Magdalenian the Mediterranean used to lie at a distance of 350 km from Rochereil, and the Atlantic was not significantly closer (~200 km). Importantly, exploitation of fossil shells cannot be discounted on the basis of the data presented here; direct dating of some of the specimens (e.g. by radiocarbon, or amino acid racemisation geochronology) would be beneficial to clarify this issue and in general to improve chronological control on the accumulation of shells. Nonetheless, the authors argue that the closest fossil deposits also lie more than 200 km away from the site, thus the material is allochthonous in origin.
In synthesis, the Rochereil assemblage represents an important step towards a better understanding of the procurement chain and of the production of ornaments during the European Upper Palaeolithic.
Jude, P. E. (1960). La grotte de Rocherreil: station magdalénienne et azilienne, Masson.
Rigaud, S., O'Hara, J., Charles, L., Man-Estier, E. and Paillet, P. (2022) The management of symbolic raw materials in the Late Upper Paleolithic of South-Western France: a shell ornaments perspective. SocArXiv, z7pqg, ver. 4 peer-reviewed and recommended by Peer community in Archaeology. https://doi.org/10.31235/osf.io/z7pqg
Taborin, Y. (1993). La parure en coquillage au Paléolithique, CNRS éditions.
|The management of symbolic raw materials in the Late Upper Paleolithic of South-Western France: a shell ornaments perspective||Solange Rigaud, John O’Hara, Laurent Charles, Elena Man-Estier, Patrick Paillet||<p>Personal ornaments manufactured on marine and fossil shell are a significant element of Upper Palaeolithic symbolic material culture, and are often found at considerable distances from Pleistocene coastlines or relevant fossil deposits. Here, w...||Europe, Symbolic behaviours, Upper Palaeolithic||Beatrice Demarchi||2022-04-23 19:20:02||View|
19 Jun 2020
Platforms of Palaeolithic knappers reveal complex linguistic abilitiesCédric Gaucherel and Camille Noûs https://doi.org/10.31233/osf.io/wn5za
The means of complexity in a lithic reduction sequenceRecommended by Marta Arzarello based on reviews by Antony Borel and 1 anonymous reviewer
The paper entitled “Platforms of Palaeolithic knappers reveal complex linguistic abilities”  submitted by C. Gaucherel and C. Noûs represents an interesting reflection about the possibilities to detect the human cognitive abilities in relation to the lithic production.
The definition and the study of human cognitive abilities during the Lower Palaeolithic it has always been a complex field of investigation. The relation between the technical skills (lithic production) and the emergence of the linguistic abilities is not easy to investigate due to the difficulty of finding objective data to refer to. The proposition, made by C. Gaucherel and C. Noûs, of a formal grammar of knapping as a method to study the syntactical organisation of the reduction sequences, constitute a new and theoretical useful approach.
In order to effectively and precisely define the gestures linked to a specific reduction sequence, for example that of the handaxes shaping, a very large number of variables should be taken into consideration (morphology and quality of the raw material, experience of the knapper, context, percussion technique, forecast of use of the handaxe, etc.). But since a simplification, that brings more elements than the classic one [2,3] is needed, the “action grammar approach” can be a good instrument to detect the common element in a shaping reduction sequence. Furthermore, one of the advantages of the proposed methodology lies in the fact that the definition of the different STs (Stone Technology) can be done according to the technological specific characteristics to be studied and to the type of instrument produced.
The deconstruction of knapping sequences could help to detect the degree of complexity of the different steps of the reduction sequences also thanks to the identification of the sub-actions types. The increasing/decreasing of complexity is a very complicate concept in lithic technology. Since at the base of the lithic production there are two basic concepts (angle between the striking platform and the debitage surface - convexity of the debitage/façonnage surface) which are simply declined in an increasingly complex way, it is not easy to define uniquely in what exactly consists the increase in complexity. The approach proposed in the paper “Platforms of Palaeolithic knappers reveal complex linguistic abilities” can help to have new evidences, according to the identification of the required cognitive abilities.
The proposed example of formal grammar still needs to be confirmed on archaeological collections, but it is probable that a practical application will allow to further develop the methodology and possibly to highlight additional possibilities of the approach.
 Gaucherel, C. and Noûs C. (2020). Platforms of Palaeolithic knappers reveal complex linguistic abilities. Paleorxiv, wn5za, ver. 6 peer-reviewed and recommended by PCI Archaeology. doi: 10.31233/osf.io/wn5za
|Platforms of Palaeolithic knappers reveal complex linguistic abilities||Cédric Gaucherel and Camille Noûs||<p>Recent studies in cognitive neurosciences have postulated a possible link between manual praxis such as tool-making and human languages. If confirmed, such a link opens significant avenues towards the study of the evolution of natural languages...||Africa, Ancient Palaeolithic, Lithic technology, Theoretical archaeology||Marta Arzarello||2020-04-30 14:18:26||View|
24 Jun 2021
The strength of parthood ties. Modelling spatial units and fragmented objects with the TSAR method – Topological Study of Archaeological RefittingSébastien Plutniak https://osf.io/q2e69
A practical computational approach to stratigraphic analysis using conjoinable material culture.Recommended by Hector A. Orengo based on reviews by Robert Bischoff, Matthew Peeples and 1 anonymous reviewer
The paper by Plutniak  presents a new method that uses refitting to help interpret stratigraphy using the topological distribution of conjoinable material culture. This new method opens up new avenues to the archaeological use of network analysis but also to assess the integrity of interpreted excavation layers. Beyond its evident applicability to standard excavation practice, the paper presents a series of characteristics that exemplify archaeological publication best practices and, as someone more versed in computational than in refitting studies I would like to comment upon.
It was no easy task to find adequate reviewers for this paper as it combines techniques and expertise that are not commonly found together in individual researchers. However, Plutniak, with help from three reviewers, particularly M. Peeples, a leading figure in archaeological applications of network science, makes a considerable effort to be accessible to non-specialist archaeologists. The core Topological Study of Archaeological Refitting (TSAR) method is freely accessible as the R package archeofrag, which is available at the Comprehensive R Archive Network (https://CRAN.R-project.org/package=archeofrag) that can be applied without the need to understand all its mathematical, graph theory and coding aspects. Beside these, an online interface including test data has been provided (https://analytics.huma-num.fr/Sebastien.Plutniak/archeofrag/), which aims to ease access to the method to those archaeologists inexperienced with R. Finally, supplementary material showing how to use the package and evaluating its potential through excellent examples is provided as both pdf and Rmw (Sweave) files. This is an important companion for the paper as it allows a better understanding of the methods presented in the paper and its practical application.
The author shows particular care in testing the potential and capabilities of the method. For example, a function is provided “frag.observer.failure” to test the robustness of the edge count method against the TSAR method, which is able to prove that TSAR can deal well with incomplete information. As a further step in this direction both simulated and real field-acquired data are used to test the method which further proves that archeofrag is not only able to quantitatively assess the mixture of excavated layers but to propose meaningful alternatives, which no doubt will add an increased methodological consistency and thoroughness to previous quantitative approaches to material refitting work, even when dealing with very complex stratigraphies.
All in all, this paper makes an important contribution to core archaeological practice through the use of innovative, reproducible and accessible computational methods. I fully endorse it for the conscious and solid methods it presents but also for its adherence to open publication practices. I hope that it can become of standard use in the reconstruction of excavated stratigraphical layers through conjoinable material culture.
 Plutniak, S. 2021. The Strength of Parthood Ties. Modelling Spatial Units and Fragmented Objects with the TSAR Method – Topological Study of Archaeological Refitting. OSF Preprints, q2e69, ver. 3 Peer-reviewed and recommended by PCI Archaeology. https://doi.org/10.31219/osf.io/q2e69.
|The strength of parthood ties. Modelling spatial units and fragmented objects with the TSAR method – Topological Study of Archaeological Refitting||Sébastien Plutniak||<p>Refitting and conjoinable pieces have long been used in archaeology to assess the consistency of discrete spatial units, such as layers, and to evaluate disturbance and post-depositional processes. The majority of current methods, despite their...||Computational archaeology, Taphonomy||Hector A. Orengo||2021-01-14 18:31:01||View|
21 Nov 2022
Removing Barriers to Reproducible Research in ArchaeologyEmma Karoune and Esther Plomp https://doi.org/10.5281/zenodo.7320029
Three levels of reproducible workflow remove barriers for archaeologists and increase accessibilityRecommended by Ben Marwick based on reviews by Sam Leggett, Cyler Conrad, Cheng Liu and Lisa Lodwick
Over the last decade, a small but growing community of archaeologists, from a diversity of intellectual and demographic backgrounds, have been striving for computational reproducibility in their published research. In their survey of the accomplishments of this thriving community, Emma Karoune and Esther Plomp (2022) analyzed the wide variety of approaches researchers have taken to enhance the reproducibility of their research. A key contribution of this paper is their excellent synthesis of diverse approaches into three levels of increasing complexity. This is helpful because it provides multiple entry points for researchers new to the challenge of fortifying their research. Many researchers assume that computational reproducibility is only achievable if they have a high degree of technical skill with computers, or is only necessary if their work is very computationally intensive. Karoune and Plomp give three compelling reasons why reproducibility is important for all archaeological research, and through their three levels they demonstrate that how these levels can be accomplished with basic, non-specialized computer skills and widely used free software. They showcase exemplary work from a variety of archaeologists to show how practical and achievable reproducible research is for all archaeologists. They advocate for archaeologists to use the most widely used and supported tools and services to support their reproducible research, such as the R and Python programming languages for data analysis, and Git and GitHub for collaboration.
This paper, with its extensive appendix including thoughtful responses to frequently asked questions about reproducible research in archaeology, is likely to have a wide reach and influence, beyond previous works on this topic that have largely focused on technical details. Karoune and Plomp have provided the on-ramp for a generation of archaeologists who will find their questions about reproducible research answered here. They will also find an agreeable entry point to reproducible research in one of the three levels described by the authors. Will every archaeologist embrace this way of working? Should they? The work of Leonelli (2018) can help us anticipate the answers to these questions. Leonelli asks where are the limits to reproducibility, and how do the characteristics of different ways of knowing affect the desirability of reproducibility? Leonelli's work invites us to consider that there will be archaeologists coming from different epistemic cultures for whom the motivations presented by Karoune and Plomp will not resonate. For example, archaeologists engaged in mostly hermeneutical social science and humanities research, who do little or no quantitative analysis and statistics, are unlikely to see reproducibility as meaningful or desirable for their work. We can describe these researchers as working in interpretative or constructivist epistemic cultures. In these cultures, the particulars of how an individual researcher engages with their subject are exclusive and unique, and they would argue it cannot be fully captured or shared in an meaningful way (Elman and Kapiszewski 2017). Here, knowledge is situational, emerging from a specific, once-off combination of people and circumstances. One example in archaeology is the chaîne opératoire approach of stone artefact analysis, which Monnier and Missal (2014:61) describe as "based upon the analyst's experience and intuition, and it is not replicable, nor quantifiable". To make sense of this example we can draw on Galison's (1997) concept of 'image traditions' and 'logic traditions'. An image tradition is a way of knowing that is qualitative, based on composing narratives from drawings and photographs. A logic tradition is based on the use of instruments and statistical methods to collect standardised quantitative data. Chaîne opératoire approaches fall into the image tradition, along with many other ways of working in archaeology that do not generate numbers or use them to support claims about the past. Archaeologists working in a logic tradition will find reproducible research to be more meaningful than those working in an image tradition.
We should be mindful not to claim that one epistemic culture is superior to another because reproducibility is not meaningful or attainable for researchers in one culture. Such a claim would threaten the plurality that is essential for the reliability of scientific knowledge (Massimi 2022). Instead we should identify those communities in archaeology where reproducible research is both meaningful and attainable, but has not yet been widely embraced. That is the where the most beneficial effects can be expected. According to Leonelli's (2018) framework, we can recognise these communities by a few basic characteristics. For example: they are doing computationally intensive archaeology, such as using or writing software to collect, simulate, analyse or visualise data; they are doing experimental archaeology; or they are making knowledge claims that are supported by tables of numeric data and data visualisations. Archaeologists whose work shares one or more of these characteristics will find the guidance provided here by Karoune and Plomp to be highly instructive and relevant, and stand the most to benefit from it.
But it is not only individual archaeological scientists that have potential to benefit from how Karoune and Plomp have lowered the barriers to reproducible research. An especially important implication of this paper is that by lowering the barriers to reproducible research, Karoune and Plomp help us all to lower barriers to participation in archaeology in general. Documenting our research transparently, and sharing our materials (such as data and code and so on) openly, can profoundly change how others can participate in archaeology. By doing this, we are enabling students and researchers elsewhere, for example in low and middle income locations, to use our materials in their teaching and learning. Other researchers and students can apply our methods to their data, and combine their data with ours to achieve syntheses beyond what a single project can do. Similarly, for archaeologists working with local, descendant or marginalized communities, the tools of reproducible research are vital for enabling community members to have full access to the archaeological process, and thus reproducibility may be considered a necessity for decolonising the discipline. Karoune and Plomp present the CARE principles (Carroll et al. 2020) to guide archaeologists in ensuring community control of data so that reproducibility can be ethically accomplished with community safety and well-being as a priority. This may have a profoundly positive impact on the demographics of archaeology, as it lowers the barriers of meaningful participation by people far beyond our immediate groups of collaborators.
Making archaeology more accessible is of critical importance in stemming the negative social impacts of pseudoarchaeologists, who often claim that archaeologists actively suppress the truth of the archaeological record through secrecy, elitism, and exclusiveness. The harm in this is twofold. First, that pseudoarchaeology typically erases Indigenous heritage by claiming that their past achievements were due to an ancient, extinct advanced civilization, not Indigenous people. These claims are often adopted by white supremacists to support racist and antisemitic conspiracy theories (Turner and Turner 2021), which sometimes leads to prejudice, physical violence, radicalization and extremism. A second type of harm that can come from claims of secrecy and elitism is it drains public trust in experts, leading to science denial. Not only trust in archaeologists, but trust in many kinds of experts, including those working on urgent contemporary issues such as public health and climate change. Karoune and Plomp's work is important here because it provides a practical and affordable pathway for archaeologists to fight claims of secrecy and elitism by sharing their work in ways that make it possible for non-academics to inspect the analyses and logic in detail. Claims of secrecy and elitism can be easily countered by openness, transparently and reproducibility by archaeologists. This is not only useful for tackling pseudoarchaeologists, but also in enacting an ethic of care, framing members of the public as people that not only care about archaeology as part of humanity's shared heritage, but also care for the construction of reliable interpretations of the archaeological record to provide secure and authentic foundations for their social identities and relationships (Wylie et al 2018; de la Bellacasa 2011). By striving for reproducible research in the way described by Karoune and Plomp, we are practicing a kind of reciprocal care among ourselves as archaeologists, and between archaeologists and members of the public as two communities who care about the human past.
Karoune, E., and Plomp, E. (2022). Removing Barriers to Reproducible Research in Archaeology. Zenodo, 7320029, ver. 5 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.5281/zenodo.7320029
de la Bellacasa, M. P. (2011). Matters of care in technoscience: Assembling neglected things. Social Studies of Science, 41(1), 85–106. https://doi.org/10.1177/0306312710380301
Carroll, S. R., Garba, I., Figueroa-Rodríguez, O. L., Holbrook, J., Lovett, R., Materechera, S., Parsons, M., Raseroka, K., Rodriguez-Lonebear, D., Rowe, R., Sara, R., Walker, J. D., Anderson, J., and Hudson, M. (2020). The CARE Principles for Indigenous Data Governance. Data Science Journal, 19(1), Article 1. https://doi.org/10.5334/dsj-2020-043
Elman, C., and Kapiszewski, D. (2017). Benefits and Challenges of Making Qualitative Research More Transparent. Inside Higher Ed 2017, http://web.archive.org/web/20220407064134/https://www.insidehighered.com/blogs/rethinking-research/benefits-and-challenges-making-qualitative-research-more-transparent (accessed 21 Oct, 2022).
Galison, P. (1997). Image and logic: a material culture of microphysics. Chicago (IL): University of Chicago Press.
Leonelli, S. (2018). Re-Thinking Reproducibility as a Criterion for Research Quality [preprint]. Available online: http://philsci-archive.pitt.edu/id/eprint/14352 (Accessed 21 Oct 2022).
Massimi, M. (2022). Perspectival realism. Oxford University Press.
Monnier, G. F., and Kele M.. "Another Mousterian debate? Bordian facies, chaîne opératoire technocomplexes, and patterns of lithic variability in the western European Middle and Upper Pleistocene." Quaternary International 350 (2014): 59-83. https://doi.org/10.1016/j.quaint.2014.06.053
Turner, D. D., and Turner, M. I. (2021). “I’m Not Saying It Was Aliens”: An Archaeological and Philosophical Analysis of a Conspiracy Theory. In A. Killin and S. Allen-Hermanson (Eds.), Explorations in Archaeology and Philosophy (pp. 7–24). Springer International Publishing. https://doi.org/10.1007/978-3-030-61052-4_2
Wylie, C., Neeley, K., and Ferguson, S. (2018). Beyond Technological Literacy: Open Data as Active Democratic Engagement? Digital Culture & Society, 4(2), 157–182. https://doi.org/10.14361/dcs-2018-0209
|Removing Barriers to Reproducible Research in Archaeology||Emma Karoune and Esther Plomp||<p>Reproducible research is being implemented at different speeds in different disciplines, and Archaeology is at the start of this journey. Reproducibility is the practice of reanalysing data by taking the same steps and producing the same or sim...||Computational archaeology||Ben Marwick||2022-06-07 10:02:46||View|
02 May 2023
Transmission of lithic and ceramic technical know-how in the Early Neolithic of central-western Europe: Shedding Light on the Social Mechanisms underlying Cultural TransitionSolène Denis, Louise Gomart, Laurence Burnez-Lanotte, Pierre Allard https://osf.io/gqnht/
A Thought Provoking Consideration of Craft in the NeolithicRecommended by Clare Burke based on reviews by Bogdana Milić and 1 anonymous reviewer
The pioneering work of Leroi-Gourhan introduced archaeologists to the concept of the chaîne opératoire, whereby, like his supervisor Mauss, Leroi-Gourhan proposed direct links between bodily actions and aspects of cultural identity. The chaîne opératoire offers a powerful conceptual tool with which to reconstruct and describe the technological practices undertaken by craftspeople, linking material objects to the cultural context in which crafts are learnt. Although initially applied to lithics, the concept today is well known in ceramic studies, as well as, other material crafts, in order to identify aspects of tradition and identity through ideas linked to technological style[3,4] and communities of practice.
Utilizing this approach, Denis et al. use the chaîne opératoire to look at both lithics and ceramics together from a diachronic viewpoint, to examine technical systems present over the transition between Linearbandkeramic (LBK) and post LBK Blicquy/Villeneuve-Saint German (BQY/VSG) timeframes. This much needed comparative and diachronic perspective, focuses on material from the sites of Vaux-et-Borset and Verlaine in Belgium, and has enabled the authors to consider the impact of changing social dynamics on these two crafts simultaneously.
The authors examine the ceramic and lithic assemblages from a macroscopic and morphological perspective in order to identify techniques of production. The data gathered testifies to the dominance of one production technique for each craft within the LBK. There is particularly striking homogeneity noted for the lithics that suggests the transmission of a single tradition over the Hesbaye area, whilst the ceramics display greater regional diversity. The picture alters somewhat for the BQY/VSG material where it seems there is an increase in the diversity of production techniques, with both the introduction of new techniques, as well as a degree of hybridization of earlier techniques to form new BQY/VSG chaînes opératoires that have LBK roots. The BQY/VSG diversity noted for the lithics is especially interesting, with the introduction of techniques that attest to increased expertise which the authors attest to the migration of an external group.
The results of this work have allowed Denis et al. to discuss multiple influences on the technical systems they identify. Rather than trying to fit the data within a single model, the authors demonstrate the need for nuance, considering the social changes associated with Neolithic migration and interactions, as multifaced and dynamic. As such, they are able to show not only the influence of contact with other groups, but that the apparent migration of external groups does not simply lead to the replacement of the crafting heritage already established at the sites they have examined.
In concluding the authors acknowledge, that as scholars push the existing state of knowledge (in this respect analysis of raw materials would make an especially important contribution), the picture presented in the paper may alter. Future work will hopefully fill in current gaps, particularly in terms of how far the trends identified extend, and the extent to which the lithic and ceramic pictures diversify on a broader geographical scale. It is certain that based on such results, future work should adopt the comparative approach presented by the authors, who have demonstrated its explanatory potential for understanding the technical and cultural groups we all study.
 Mauss, M. 2009 . Techniques, Technology and Civilisation. Edited and introduced by N. Schlanger. New York/Oxford: Durkheim Press/Berghahn Books.
 Lechtman, H. 1977. Style in Technology: some early thoughts. In H. Lechtman and R.S. Merrill (eds.) Material Culture: styles, organization and dynamics of technology. Proceedings of the American Ethnological Society 1975, St. Paul, 3-20.
 Gosselain, O. 1992. Technology and Style: Potters and Pottery Among Bafia of Cameroon. Man 27(3) 559- 586. htpps://doi.org/10.2307/2803929.
 Wenger, E. 1998. Communities of practice: Learning, meaning, and identity. Cambridge: Cambridge University Press.
 Denis, S., Gomart, L., Burnez-Lanotte, L. and Allard, P. (2023). Transmission of lithic and ceramic technical know-how in the Early Neolithic of central-western Europe: Shedding Light on the Social Mechanisms underlying Cultural Transition. OSF Preprints, gqnht, ver. 5 peer-reviewed and recommended by Peer Community in Archaeology. https://doi.org/10.31219/osf.io/gqnht
|Transmission of lithic and ceramic technical know-how in the Early Neolithic of central-western Europe: Shedding Light on the Social Mechanisms underlying Cultural Transition||Solène Denis, Louise Gomart, Laurence Burnez-Lanotte, Pierre Allard||<p>Research on the European Neolithisation agrees that a process of colonisation throughout the sixth millennium BC underlies the spread of agricultural ways of life on the continent. From central to central-western Europe, this colonisation path ...||Ceramics, Europe, Lithic technology, Neolithic||Clare Burke||2022-11-18 12:03:55||View|
05 Jul 2023
Tool types and the establishment of the Late Palaeolithic (Later Stone Age) cultural taxonomic system in the Nile ValleyAlice Leplongeon https://doi.org/10.5281/zenodo.8115202
Cultural taxonomic systems and the Late Palaeolithic/Later Stone Age prehistory of the Nile Valley – a critical reviewRecommended by Felix Riede, Sébastien Plutniak and Shumon Tobias Hussain based on reviews by Giuseppina Mutri and 1 anonymous reviewer
The paper entitled “Tool types and the establishment of the Late Palaeolithic (Later Stone Age) cultural taxonomic system in the Nile Valley” submitted by A. Leplongeon offers a review of the many cultural taxonomic in use for the prehistory – especially the Late Palaeolithic/Late Stone Age – of the Nile Valley (Leplongeon 2023). This paper was first developed for a special conference session convened at the EAA annual meeting in 2021 and is intended for an edited volume on the topic of typology and taxonomy in archaeology.
Issues of cultural taxonomy have recently risen to the forefront of archaeological debate (Reynolds and Riede 2019; Ivanovaitė et al. 2020; Lyman 2021). Archaeological systematics, most notably typology, have roots in the research history of a particular region and period (e.g. Plutniak 2022); commonly, different scholars employ different and at times incommensurable systems, often leading to a lack of clarity and inter-regional interoperability. African prehistory is not exempt from this debate (e.g. Wilkins 2020) and, in fact, such a situation is perhaps nowhere more apparent than in the iconic Nile Valley. The Nile Valley is marked by a complex colonial history and long-standing archaeological interest from a range of national and international actors. It is also a vital corridor for understanding human dispersals out of and into Africa, and along the North African coastal zone. As Leplongeon usefully reviews, early researchers have, as elsewhere, proposed a variety of archaeological cultures, the legacies of which still weigh in on contemporary discussions. In the Nile Valley, these are the Kubbaniyan (23.5-19.3 ka cal. BP), the Halfan (24-19 ka cal. BP), the Qadan (20.2-12 ka cal BP), the Afian (16.8-14 ka cal. BP) and the Isnan (16.6-13.2 ka cal. BP) but their temporal and spatial signatures remain in part poorly constrained, or their epistemic status debated. Leplongeon’s critical and timely chronicle of this debate highlights in particular the vital contributions of the many female prehistorians who have worked in the region – Angela Close (e.g. 1978; 1977) and Maxine Kleindienst (e.g. 2006) to name just a few of the more recent ones – and whose earlier work had already addressed, if not even solved many of the pressing cultural taxonomic issues that beleaguer the Late Palaeolithic/Later Stone Age record of this region.
Leplongeon and colleagues (Leplongeon et al. 2020; Mesfin et al. 2020) have contributed themselves substantially to new cultural taxonomic research in the wider region, showing how novel quantitative methods coupled with research-historical acumen can flag up and overcome the shortcomings of previous systematics. Yet, as Leplongeon also notes, the cultural taxonomic framework for the Nile Valley specifically has proven rather robust and does seem to serve its purpose as a broad chronological shorthand well. By the same token, she urges due caution when it comes to interpreting these lithic-based taxonomic units in terms of past social groups. Cultural systematics are essential for such interpretations, but age-old frameworks are often not fit for this purpose. New work by Leplongeon is likely to not only continue the long tradition of female prehistorians working in the Nile Valley but also provides an epistemologically and empirically more robust platform for understanding the social and ecological dynamics of Late Palaeolithic/Later Stone Age communities there.
Close, Angela E. 1977. The Identification of Style in Lithic Artefacts from North East Africa. Mémoires de l’Institut d’Égypte 61. Cairo: Geological Survey of Egypt.
Close, Angela E. 1978. “The Identification of Style in Lithic Artefacts.” World Archaeology 10 (2): 223–37. https://doi.org/10.1080/00438243.1978.9979732
Ivanovaitė, Livija, Serwatka, Kamil, Steven Hoggard, Christian, Sauer, Florian and Riede, Felix. 2020. “All These Fantastic Cultures? Research History and Regionalization in the Late Palaeolithic Tanged Point Cultures of Eastern Europe.” European Journal of Archaeology 23 (2): 162–85. https://doi.org/10.1017/eaa.2019.59
Kleindienst, M. R. 2006. “On Naming Things: Behavioral Changes in the Later Middle to Earlier Late Pleistocene, Viewed from the Eastern Sahara.” In Transitions Before the Transition. Evolution and Stability in the Middle Paleolithic and Middle Stone Age, edited by E. Hovers and Steven L. Kuhn, 13–28. New York, NY: Springer.
Leplongeon, Alice. 2023. “Tool Types and the Establishment of the Late Palaeolithic (Later Stone Age) Cultural Taxonomic System in the Nile Valley.” https://doi.org/10.5281/zenodo.8115202
Leplongeon, Alice, Ménard, Clément, Bonhomme, Vincent and Bortolini, Eugenio. 2020. “Backed Pieces and Their Variability in the Later Stone Age of the Horn of Africa.” African Archaeological Review 37 (3): 437–68. https://doi.org/10.1007/s10437-020-09401-x
Lyman, R. Lee. 2021. “On the Importance of Systematics to Archaeological Research: The Covariation of Typological Diversity and Morphological Disparity.” Journal of Paleolithic Archaeology 4 (1): 3. https://doi.org/10.1007/s41982-021-00077-6
Mesfin, Isis, Leplongeon, Alice, Pleurdeau, David, and Borel, Antony. 2020. “Using Morphometrics to Reappraise Old Collections: The Study Case of the Congo Basin Middle Stone Age Bifacial Industry.” Journal of Lithic Studies 7 (1): 1–38. https://doi.org/10.2218/jls.4329
Plutniak, Sébastien. 2022. “What Makes the Identity of a Scientific Method? A History of the ‘Structural and Analytical Typology’ in the Growth of Evolutionary and Digital Archaeology in Southwestern Europe (1950s–2000s).” Journal of Paleolithic Archaeology 5 (1): 10. https://doi.org/10.1007/s41982-022-00119-7
Reynolds, Natasha, and Riede, Felix. 2019. “House of Cards: Cultural Taxonomy and the Study of the European Upper Palaeolithic.” Antiquity 93 (371): 1350–58. https://doi.org/10.15184/aqy.2019.49
Wilkins, Jayne. 2020. “Is It Time to Retire NASTIES in Southern Africa? Moving Beyond the Culture-Historical Framework for Middle Stone Age Lithic Assemblage Variability.” Lithic Technology 45 (4): 295–307. https://doi.org/10.1080/01977261.2020.1802848
|Tool types and the establishment of the Late Palaeolithic (Later Stone Age) cultural taxonomic system in the Nile Valley||Alice Leplongeon||<p>Research on the prehistory of the Nile Valley has a long history dating back to the late 19th century. But it is only between the 1960s and 1980s, that numerous cultural entities were defined based on tool and core typologies; this habit stoppe...||Africa, Lithic technology, Upper Palaeolithic||Felix Riede||2023-03-08 19:25:28||View|
30 Sep 2022
Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF dataBharath Nair, Ismael Rodríguez Palomo, Bo Markussen, Carsten Wiuf, Sarah Fiddyment and Matthew Collins https://doi.org/10.1101/2022.03.13.483627
Assessing glutamine deamination in ancient parchment samplesRecommended by Beatrice Demarchi based on reviews by Maria Codlin and 3 anonymous reviewers
Data authenticity and approaches to data authentication are crucial issues in ancient protein research. The advent of modern mass spectrometry has enabled the detection of traces of ancient biomolecules contained in fossils, including protein sequences. However, detecting proteins in ancient samples does not equate to demonstrating their endogenous nature: instead, if the mechanisms that drive protein preservation and degradation are understood, then the extent of protein diagenesis can be used for evaluating preservational quality, which in turn may be related to the authenticity of the protein data.
The post-mortem deamidation of asparaginyl and glutamyl residues is a key degradation reaction, which can be assessed effectively on the basis of mass spectrometry data, and which has accrued a long history of research, both in terms of describing the mechanisms governing the reactions and with regard to the best strategies for assessing and quantifying the extent of glutamine (Gln) and asparagine (Asn) deamidation in ancient samples (Pal Chowdhury et al., 2019; Ramsøe et al., 2021, 2020; Schroeter and Cleland, 2016; Simpson et al., 2016; Solazzo et al., 2014; Welker et al., 2016; Wilson et al., 2012).
In their paper, Nair and colleagues (2022) build on this wealth of knowledge and present a tool for quantifying the extent of Gln deamidation in parchment. Parchment is a collagen-based material which can yield extraordinary insights into manuscript manufacturing practices in the past, as well as on the daily lives of the people who assembled and used them (“biocodicology”) (Fiddyment et al., 2021, 2019, 2015; Teasdale et al., 2017). Importantly, the extent of deamidation can be directly related to the quality of the parchment produced: rapid direct deamidation of Gln is induced by the liming process, therefore high extents of deamidation are linked to prolonged exposure to the high pH conditions which are typical of liming, thus implying lower-quality parchment.
Nair et al.’s approach focuses on collagen peptides which are typically detected during MALDI-TOF mass spectrometry analyses of parchment and build a simple three-step workflow able to yield an overall index of deamidation for a sample (the parchment glutamine index - PQI) 一 taking into account that different Gln residues degrade at different rates according to their micro-chemical environment. The first step involves pre-processing the MALDI spectra, since Nair et al. are specifically interested in maximising information which can be obtained by low-quality data. The second step builds on well-established methods for quantifying Q → E from MALDI-TOF data by modelling the convoluted isotope distributions (Wilson et al., 2012). Once relative rates of deamidation in selected peptides within a given sample are calculated, the third step uses a mixed effects model to combine the individual deamidation estimates and to obtain an overall estimate of the deamidation for a parchment sample (PQI).
The PQI can be used effectively for assessing parchment quality, as the authors show for the dataset from Orval Abbey. However, PQI could also have wider applications to the study of processed collagen, which is widely used in the food and pharmaceutical industries. In general, the study by Nair et al. is a welcome addition to a growing body of research on protein diagenesis, which will ultimately improve models for the assessment of the authenticity of biomolecular data in archaeology.
Chowdhury, P.M., Wogelius, R., Manning, P.L., Metz, L., Slimak, L., and Buckley, M. 2019. Collagen deamidation in archaeological bone as an assessment for relative decay rates. Archaeometry 61:1382–1398. https://doi.org/10.1111/arcm.12492
Fiddyment, S., Goodison, N.J., Brenner, E., Signorello, S., Price, K., and Collins, M.J.. 2021. Girding the loins? Direct evidence of the use of a medieval parchment birthing girdle from biomolecular analysis. bioRxiv. https://doi.org/10.1098/rsos.202055
Fiddyment,S., Holsinger, B., Ruzzier, C., Devine, A., Binois, A., Albarella, U., Fischer, R., Nichols, E., Curtis, A., Cheese, E., Teasdale, M.D., Checkley-Scott, C., Milner, S.J., Rudy, K.M., Johnson, E.J., Vnouček, J., Garrison, M., McGrory, S., Bradley, D.G., and Collins, M.J. 2015. Animal origin of 13th-century uterine vellum revealed using noninvasive peptide fingerprinting. Proc Natl Acad Sci U S A 112:15066–15071. https://doi.org/10.1073/pnas.1512264112
Fiddyment, S., Teasdale, M.D., Vnouček, J., Lévêque, É., Binois, A., and Collins, M.J. 2019. So you want to do biocodicology? A field guide to the biological analysis of parchment. Heritage Science 7:35. https://doi.org/10.1186/s40494-019-0278-6
Nair, B., Rodríguez Palomo, I., Markussen, B., Wiuf, C., Fiddyment, S., and Collins, M. Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data. BiorRxiv, 2022.03.13.483627, ver. 6 peer-reviewed and recommended by Peer community in Archaeology. https://doi.org/10.1101/2022.03.13.483627
Ramsøe, A., Crispin, M., Mackie, M., McGrath, K., Fischer, R., Demarchi, B., Collins, M.J., Hendy, J., and Speller, C. 2021. Assessing the degradation of ancient milk proteins through site-specific deamidation patterns. Sci Rep 11:7795. https://doi.org/10.1038/s41598-021-87125-x
Ramsøe, A., van Heekeren, V., Ponce, P., Fischer, R., Barnes, I., Speller, C., and Collins, M.J. 2020. DeamiDATE 1.0: Site-specific deamidation as a tool to assess authenticity of members of ancient proteomes. J Archaeol Sci 115:105080. https://doi.org/10.1016/j.jas.2020.105080
Schroeter, E.R., and Cleland, T.P. 2016. Glutamine deamidation: an indicator of antiquity, or preservational quality? Rapid Commun Mass Spectrom 30:251–255. https://doi.org/10.1002/rcm.7445
Simpson, J.P., Penkman, K.E.H., and Demarchi, B. 2016. The effects of demineralisation and sampling point variability on the measurement of glutamine deamidation in type I collagen extracted from bone. J Archaeol Sci 69: 29-38. https://doi.org/10.1016/j.jas.2016.02.002
Solazzo, C., Wilson, J., Dyer, J.M., Clerens, S., Plowman, J.E., von Holstein, I., Walton Rogers, P., Peacock, E.E., and Collins, M.J. 2014. Modeling deamidation in sheep α-keratin peptides and application to archeological wool textiles. Anal Chem 86:567–575. https://doi.org/10.1021/ac4026362
Teasdale, M.D., Fiddyment, S., Vnouček, J., Mattiangeli, V., Speller, C., Binois, A., Carver, M., Dand, C., Newfield, T.P., Webb, C.C., Bradley, D.G., and Collins M.J. 2017. The York Gospels: a 1000-year biological palimpsest. R Soc Open Sci 4:170988. https://doi.org/10.1098/rsos.170988
Welker, F., Soressi, M.A., Roussel, M., van Riemsdijk, I., Hublin, J.-J., and Collins, M.J. 2016. Variations in glutamine deamidation for a Châtelperronian bone assemblage as measured by peptide mass fingerprinting of collagen. STAR: Science & Technology of Archaeological Research 3:15–27. https://doi.org/10.1080/20548923.2016.1258825
Wilson, J., van Doorn, N.L., and Collins, M.J. 2012. Assessing the extent of bone degradation using glutamine deamidation in collagen. Anal Chem 84:9041–9048. https://doi.org/10.1021/ac301333t
|Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data||Bharath Nair, Ismael Rodríguez Palomo, Bo Markussen, Carsten Wiuf, Sarah Fiddyment and Matthew Collins||<p style="text-align: justify;">Parchment was used as a writing material in the Middle Ages and was made using animal skins by liming them with Ca(OH)<span class="math-tex">\( _2 \)</span>. During liming, collagen peptides containing Glutamine (Q)...||Bioarchaeology, Europe, Medieval, Zooarchaeology||Beatrice Demarchi||2022-03-22 12:54:10||View|